Copyright Arrows Logo 3D Periodic Editor  3D Molecular And Reaction Editor   Expert Editor   Microsoft Quantum Editor   EMSL Aerosol Workshop Editor   Manual

Results from an EMSL Arrows Calculation

EMSL Arrows is a revolutionary approach to materials and chemical simulations that uses NWChem and chemical computational databases to make materials and chemical modeling accessible via a broad spectrum of digital communications including posts to web APIs, social networks, and traditional email.

Molecular modeling software has previously been extremely complex, making it prohibative to all but experts in the field, yet even experts can struggle to perform calculations. This service is designed to be used by experts and non-experts alike. Experts can carry out and keep track of large numbers of complex calculations with diverse levels of theories present in their workflows. Additionally, due to a streamlined and easy-to-use input, non-experts can carry out a wide variety of molecular modeling calculations previously not accessible to them.



The id(s) for emsiles = Cl/[C]=C\Cl theory{dft} xc{pbe} basis{6-311++G(2d,2p)} solvation_type{COSMO} ^{0} mult{2} are: 78988 
Use id=% instead of esmiles to print other entries.

mformula     = C2Cl2H1
iupac        = Cl/[C]=C\Cl doublet radical
PubChem      = 
PubChem LCSS = 

Search Links to Other Online Resources (may not be available):
 - Google Structure Search
 - EPA CompTox Database
 - Chemical Entities of Biological Interest (ChEBI)
 - NIH ChemIDplus - A TOXNET DATABASE
 - The Human Metabolome Database (HMDB)
 - OECD eChemPortal
 - Google Scholar



+==================================================+
||              Molecular Calculation             ||
+==================================================+

Id     = 78988

NWOutput = Link to NWChem Output (download)

Datafiles:
lumo-beta.cube-586908-2024-2-1-17:39:22 (download)
homo-alpha.cube-586908-2024-2-1-17:39:22 (download)
homo-beta.cube-586908-2024-2-1-17:39:22 (download)
lumo-alpha.cube-586908-2024-2-1-17:39:22 (download)
dft-pbe-181280.cosmo.xyz-586908-2024-2-1-17:39:22 (download)
mo_orbital_nwchemarrows-2024-7-15-20-25-185231.out-449175-2024-7-16-13:40:36 (download)

image_resset: api/image_reset/78988

Calculation performed by Eric Bylaska - arrow11.emsl.pnl.gov
Numbers of cpus used for calculation = 32
Calculation walltime = 826.600000 seconds (0 days 0 hours 13 minutes 46 seconds)


+----------------+
| Energetic Data |
+----------------+

Id       = 78988 
iupac    = Cl/[C]=C\Cl doublet radical
mformula = C2Cl2H1
inchi    = InChI=1S/C2HCl2/c3-1-2-4/h1H
inchikey = COEAGUCZYNIEPG-UHFFFAOYSA-N
esmiles  = Cl/[C]=C\Cl theory{dft} xc{pbe} basis{6-311++G(2d,2p)} solvation_type{COSMO} ^{0} mult{2}
calculation_type = ovc
theory           = dft
xc               = pbe
basis            = 6-311++G(2d,2p)
charge,mult      = 0 2
energy           =    -996.686349 Hartrees
enthalpy correct.=       0.026175 Hartrees
entropy          =         71.190 cal/mol-K
solvation energy =         -0.884 kcal/mol  solvation_type = COSMO
Sitkoff cavity dispersion          =          1.946 kcal/mol
Honig cavity dispersion            =          5.430 kcal/mol
ASA solvent accesible surface area =        217.184 Angstrom2
ASA solvent accesible volume       =        222.218 Angstrom3



+-----------------+
| Structural Data |
+-----------------+

JSmol: an open-source HTML5 viewer for chemical structures in 3D


  Number of Atoms = 5
 
  Units are Angstrom for bonds and degrees for angles

      Type          I     J     K     L     M      Value
      ----------- ----- ----- ----- ----- ----- ----------
    1 Stretch        C1    C2                      1.31488
    2 Stretch        C1    H4                      1.08717
    3 Stretch        C1   Cl5                      1.76287
    4 Stretch        C2   Cl3                      1.66443
    5 Bend           C2    C1    H4              122.46529
    6 Bend           C2    C1   Cl5              123.85232
    7 Bend           H4    C1   Cl5              113.68239
    8 Bend           C1    C2   Cl3              138.09409
    9 Dihedral      Cl3    C2    C1    H4       -179.87829
   10 Dihedral      Cl3    C2    C1   Cl5          0.14962

 
+-----------------+
| Eigenvalue Data |
+-----------------+

Id       = 78988
iupac    = Cl/[C]=C\Cl doublet radical
mformula = C2Cl2H1
InChI    = InChI=1S/C2HCl2/c3-1-2-4/h1H
smiles   = Cl/[C]=C\Cl
esmiles  = Cl/[C]=C\Cl theory{dft} xc{pbe} basis{6-311++G(2d,2p)} solvation_type{COSMO} ^{0} mult{2}
theory   = dft
xc       = pbe
basis    = 6-311++G(2d,2p)
charge   = 0
mult     = 2
solvation_type = COSMO

twirl webpage  = TwirlMol Link
image webpage  = GIF Image Link

                      Unrestricted Eigevalue Spectra

                alpha                               beta
               ----  ----   66.59 eV                --- -- ---   66.80 eV       
               --- -- ---                           ----  ----                  
               ----  ----                           ----  ----                  
               --- -- ---                           -- -- -- -                  
               --- -- ---                           ----  ----                  
               ----------                           ----------                  
                                                                                
                                                                                
                                                                                
                                                                                
                                                                                
                                                    ----------                  
               ----------                                                       
                                                                                
                                                                                
               ----  ----                           ----  ----                  
                                                                                
               ----------                           ----------                  
               ----------                           --- -- ---                  
               ----  ----                           ----------                  
               --- -- ---                           ----  ----                  
                                                                                
               ----------                           ----------                  
               ----------                           ----------                  
               ----  ----                           ----  ----                  
               ----  ----                           --- -- ---                  
               ----  ----                           ----------                  
               ----  ----                           ----  ----                  
               -- -- -- -                           -- -- -- -                  
               --- -- ---                           --- -- ---                  
               - - - - --                           6  - - - -                  
               7  - - - -                           7  - - - -                  
               ----  ----                           ----------                  
               ----  ----                           ----  ----                  
               -- -- -- -                           -- -- -- -                  
               8  - - - -                           8  - - - -                  
               -- -- -- -                           - - - - --                  
               --- -- ---LUMO=  -1.52 eV            ----  ----                  
                                                                                
                                                    ----------LUMO=  -4.43 eV   
HOMO=  -6.23 eV++++  ++++            HOMO=  -6.38 eV++++++++++                  
               ++++  ++++                           +++ ++ +++                  
               ++++  ++++                           ++++++++++                  
               ++++  ++++                           ++++  ++++                  
               ++++++++++                           ++++++++++                  
                                                                                
                                                    ++++++++++                  
               ++++++++++                                                       
               ++++++++++                           ++++++++++                  
      -23.13 eV++++++++++                  -22.89 eV++++++++++                  



spin            eig      occ
----------------------------
alpha        -23.13     1.00
alpha        -21.88     1.00
alpha        -18.60     1.00
alpha        -14.20     1.00
alpha        -12.20     1.00
alpha        -11.81     1.00
alpha        -10.15     1.00
alpha         -9.50     1.00
alpha         -8.86     1.00
alpha         -7.99     1.00
alpha         -6.55     1.00
alpha         -6.23     1.00
alpha         -1.52     0.00
alpha         -1.01     0.00
alpha         -0.27     0.00
alpha          0.10     0.00
alpha          0.60     0.00
alpha          0.83     0.00
alpha          1.21     0.00
alpha          1.93     0.00
alpha          2.07     0.00
alpha          2.08     0.00
alpha          2.27     0.00
alpha          2.38     0.00
alpha          2.73     0.00
alpha          2.95     0.00
alpha          3.13     0.00
alpha          3.59     0.00
alpha          3.76     0.00
alpha          4.19     0.00
alpha          4.56     0.00
alpha          5.74     0.00
alpha          6.14     0.00
alpha          7.41     0.00
alpha          8.94     0.00
alpha          9.08     0.00
alpha          9.61     0.00
alpha          9.76     0.00
alpha         10.21     0.00
alpha         10.40     0.00
alpha         10.46     0.00
alpha         10.79     0.00
alpha         11.01     0.00
alpha         11.28     0.00
alpha         11.34     0.00
alpha         12.35     0.00
alpha         12.55     0.00
alpha         13.10     0.00
alpha         13.47     0.00
alpha         13.80     0.00
alpha         14.76     0.00
alpha         15.49     0.00
alpha         15.65     0.00
alpha         16.22     0.00
alpha         17.18     0.00
alpha         17.29     0.00
alpha         18.72     0.00
alpha         19.84     0.00
alpha         20.48     0.00
alpha         21.21     0.00
alpha         22.57     0.00
alpha         23.07     0.00
alpha         24.05     0.00
alpha         26.77     0.00
alpha         29.27     0.00
alpha         30.83     0.00
alpha         30.94     0.00
alpha         32.52     0.00
alpha         32.79     0.00
alpha         34.03     0.00
alpha         35.87     0.00
alpha         39.01     0.00
alpha         39.38     0.00
alpha         45.55     0.00
alpha         58.23     0.00
alpha         59.43     0.00
alpha         59.76     0.00
alpha         60.29     0.00
alpha         60.90     0.00
alpha         61.19     0.00
alpha         61.74     0.00
alpha         62.47     0.00
alpha         62.76     0.00
alpha         64.37     0.00
alpha         65.63     0.00
alpha         65.86     0.00
alpha         65.94     0.00
alpha         66.59     0.00

beta         -22.89     1.00
beta         -21.78     1.00
beta         -18.30     1.00
beta         -13.95     1.00
beta         -12.00     1.00
beta         -11.47     1.00
beta          -9.99     1.00
beta          -9.11     1.00
beta          -8.83     1.00
beta          -7.93     1.00
beta          -6.38     1.00
beta          -4.43     0.00
beta          -1.21     0.00
beta          -0.77     0.00
beta          -0.16     0.00
beta           0.27     0.00
beta           0.70     0.00
beta           1.02     0.00
beta           1.24     0.00
beta           2.01     0.00
beta           2.11     0.00
beta           2.14     0.00
beta           2.45     0.00
beta           2.45     0.00
beta           2.82     0.00
beta           3.07     0.00
beta           3.29     0.00
beta           3.71     0.00
beta           3.83     0.00
beta           4.34     0.00
beta           4.79     0.00
beta           5.81     0.00
beta           6.25     0.00
beta           7.73     0.00
beta           9.09     0.00
beta           9.29     0.00
beta           9.76     0.00
beta           9.96     0.00
beta          10.33     0.00
beta          10.46     0.00
beta          10.55     0.00
beta          10.88     0.00
beta          11.19     0.00
beta          11.33     0.00
beta          11.43     0.00
beta          12.54     0.00
beta          12.63     0.00
beta          13.36     0.00
beta          13.61     0.00
beta          14.00     0.00
beta          15.43     0.00
beta          15.92     0.00
beta          15.92     0.00
beta          16.33     0.00
beta          17.61     0.00
beta          17.71     0.00
beta          18.92     0.00
beta          20.08     0.00
beta          20.73     0.00
beta          21.75     0.00
beta          22.74     0.00
beta          23.20     0.00
beta          24.30     0.00
beta          27.06     0.00
beta          29.54     0.00
beta          30.98     0.00
beta          31.14     0.00
beta          32.93     0.00
beta          33.06     0.00
beta          34.35     0.00
beta          36.27     0.00
beta          39.26     0.00
beta          39.65     0.00
beta          46.17     0.00
beta          58.28     0.00
beta          59.64     0.00
beta          59.81     0.00
beta          60.42     0.00
beta          61.05     0.00
beta          61.30     0.00
beta          61.79     0.00
beta          62.57     0.00
beta          62.92     0.00
beta          64.45     0.00
beta          65.72     0.00
beta          66.04     0.00
beta          66.11     0.00
beta          66.80     0.00

 
+----------------------------------------+
| Vibrational Density of States Analysis |
+----------------------------------------+

Total number of frequencies = 15
Total number of negative frequencies = 0
Number of lowest frequencies = 2 (frequency threshold = 500 )
Exact dos norm = 9.000

Generating vibrational DOS
Generating model vibrational DOS to have a proper norm
10.00 9.00 2.00 9.00


50.00 9.00 2.00 9.00


100.00 8.90 1.90 9.00


Generating IR Spectra
Writing vibrational density of states (DOS) to vdos.dat
Writing model vibrational density of states (DOS_FIXED) to vdos-model.dat

Writing IR spectra to irdos.dat
Temperature= 298.15 

zero-point correction to energy                 =   13.066 kcal/mol (  0.020822)
vibrational contribution to enthalpy correction =   14.056 kcal/mol (  0.022400)
vibrational contribution to Entropy             =    5.594 cal/mol-k

hindered rotor enthalpy correction              =    0.000 kcal/mol (  0.000000)
hindered rotor entropy correction               =    0.000 cal/mol-k





DOS sigma = 10.000000
  -       vibrational DOS enthalpy correction =   0.022400 kcal/mol (  14.056 kcal/mol)
  - model vibrational DOS enthalpy correction =   0.022401 kcal/mol (  14.057 kcal/mol)
  -       vibrational DOS Entropy             =   0.000009 (   5.602 cal/mol-k)
  - model vibrational DOS Entropy             =   0.000009 (   5.603 cal/mol-k)

  - original      gas Energy       =  -996.686349 (-625430.122 kcal/mol)

  - original      gas Enthalpy     =  -996.660174 (-625413.697 kcal/mol, delta=   0.000)
  - unajusted DOS gas Enthalpy     =  -996.660173 (-625413.696 kcal/mol, delta=   0.000)
  - model     DOS gas Enthalpy     =  -996.660173 (-625413.696 kcal/mol, delta=   0.001)

  - original      gas Entropy      =     0.000113 (  71.190 cal/mol-k,delta=   0.000)
  - unajusted DOS gas Entropy      =     0.000113 (  71.198 cal/mol-k,delta=   0.008)
  - model     DOS gas Entropy      =     0.000113 (  71.199 cal/mol-k,delta=   0.009)

  - original       gas Free Energy =  -996.693999 (-625434.922 kcal/mol, delta=   0.000)
  - unadjusted DOS gas Free Energy =  -996.694002 (-625434.924 kcal/mol, delta=  -0.002)
  - model      DOS gas Free Energy =  -996.694002 (-625434.924 kcal/mol, delta=  -0.002)

  - original       sol Free Energy =  -996.695408 (-625435.806 kcal/mol)
  - unadjusted DOS sol Free Energy =  -996.695411 (-625435.808 kcal/mol)
  - model      DOS sol Free Energy =  -996.695411 (-625435.808 kcal/mol)

DOS sigma = 50.000000
  -       vibrational DOS enthalpy correction =   0.022412 kcal/mol (  14.064 kcal/mol)
  - model vibrational DOS enthalpy correction =   0.022417 kcal/mol (  14.067 kcal/mol)
  -       vibrational DOS Entropy             =   0.000009 (   5.838 cal/mol-k)
  - model vibrational DOS Entropy             =   0.000009 (   5.848 cal/mol-k)

  - original      gas Energy       =  -996.686349 (-625430.122 kcal/mol)

  - original      gas Enthalpy     =  -996.660174 (-625413.697 kcal/mol, delta=   0.000)
  - unajusted DOS gas Enthalpy     =  -996.660162 (-625413.689 kcal/mol, delta=   0.008)
  - model     DOS gas Enthalpy     =  -996.660157 (-625413.686 kcal/mol, delta=   0.011)

  - original      gas Entropy      =     0.000113 (  71.190 cal/mol-k,delta=   0.000)
  - unajusted DOS gas Entropy      =     0.000114 (  71.434 cal/mol-k,delta=   0.244)
  - model     DOS gas Entropy      =     0.000114 (  71.444 cal/mol-k,delta=   0.254)

  - original       gas Free Energy =  -996.693999 (-625434.922 kcal/mol, delta=   0.000)
  - unadjusted DOS gas Free Energy =  -996.694103 (-625434.987 kcal/mol, delta=  -0.065)
  - model      DOS gas Free Energy =  -996.694102 (-625434.987 kcal/mol, delta=  -0.065)

  - original       sol Free Energy =  -996.695408 (-625435.806 kcal/mol)
  - unadjusted DOS sol Free Energy =  -996.695511 (-625435.871 kcal/mol)
  - model      DOS sol Free Energy =  -996.695511 (-625435.871 kcal/mol)

DOS sigma = 100.000000
  -       vibrational DOS enthalpy correction =   0.022376 kcal/mol (  14.041 kcal/mol)
  - model vibrational DOS enthalpy correction =   0.022482 kcal/mol (  14.108 kcal/mol)
  -       vibrational DOS Entropy             =   0.000009 (   5.918 cal/mol-k)
  - model vibrational DOS Entropy             =   0.000010 (   6.137 cal/mol-k)

  - original      gas Energy       =  -996.686349 (-625430.122 kcal/mol)

  - original      gas Enthalpy     =  -996.660174 (-625413.697 kcal/mol, delta=   0.000)
  - unajusted DOS gas Enthalpy     =  -996.660197 (-625413.711 kcal/mol, delta=  -0.015)
  - model     DOS gas Enthalpy     =  -996.660092 (-625413.645 kcal/mol, delta=   0.052)

  - original      gas Entropy      =     0.000113 (  71.190 cal/mol-k,delta=   0.000)
  - unajusted DOS gas Entropy      =     0.000114 (  71.514 cal/mol-k,delta=   0.324)
  - model     DOS gas Entropy      =     0.000114 (  71.733 cal/mol-k,delta=   0.543)

  - original       gas Free Energy =  -996.693999 (-625434.922 kcal/mol, delta=   0.000)
  - unadjusted DOS gas Free Energy =  -996.694176 (-625435.033 kcal/mol, delta=  -0.111)
  - model      DOS gas Free Energy =  -996.694174 (-625435.032 kcal/mol, delta=  -0.110)

  - original       sol Free Energy =  -996.695408 (-625435.806 kcal/mol)
  - unadjusted DOS sol Free Energy =  -996.695585 (-625435.917 kcal/mol)
  - model      DOS sol Free Energy =  -996.695583 (-625435.916 kcal/mol)



Normal Mode    Frequency (cm-1)     IR Intensity (arbitrary)
-----------    ----------------     ------------------------
          1               0.000                        0.217
          2               0.000                        0.051
          3               0.000                        0.002
          4               0.000                        0.423
          5               0.000                        0.037
          6               0.000                        0.059
          7             130.330                        0.170
          8             349.180                        3.537
          9             546.180                        0.054
         10             667.480                        9.181
         11             711.360                       18.417
         12             756.240                       79.627
         13            1203.750                        2.309
         14            1637.520                       24.618
         15            3142.070                       11.298


No Hindered Rotor Data


+-------------------------------------+
| Reactions Contained in the Database |
+-------------------------------------+

Reactions Containing INCHIKEY = COEAGUCZYNIEPG-UHFFFAOYSA-N

Reactionid    Erxn(gas)    Hrxn(gas)    Grxn(gas)   delta_Solv     Grxn(aq) ReactionType             Reaction
     17319       36.253       36.991       34.485        0.250       34.735 AB + C --> AC + B        "ClC=C(Cl)Cl xc{m06-2x} + [OH] xc{m06-2x} --> Cl/[C]=C\Cl xc{m06-2x} + OCl xc{m06-2x}"
     17318       35.814       36.502       33.969        0.182       34.151 AB + C --> AC + B        "ClC=C(Cl)Cl xc{pbe0} + [OH] xc{pbe0} --> Cl/[C]=C\Cl xc{pbe0} + OCl xc{pbe0}"
     17317       29.326       29.930       27.371        0.056       27.426 AB + C --> AC + B        "ClC=C(Cl)Cl xc{pbe} + [OH] xc{pbe} --> Cl/[C]=C\Cl xc{pbe} + OCl xc{pbe}"
     17313       32.227       32.836       30.270        0.184       30.454 AB + C --> AC + B        "ClC=C(Cl)Cl + [OH] --> Cl/[C]=C\Cl + OCl"


All requests to Arrows were successful.


Link to EMSL Arrows API
More information about EMSL Arrows

KEYWORDs - 
   reaction: :reaction
   chinese_room: :chinese_room
   molecule: :molecule
   nmr: :nmr
   predict: :predict
   submitesmiles: :submitesmiles
   nosubmitmissingesmiles
   resubmitmissingesmiles
   submitmachines: :submitmachines
   useallentries
   nomodelcorrect
   eigenvalues: :eigenvalues
   frequencies: :frequencies
   nwoutput: :nwoutput
   xyzfile: :xyzfile
   alleigs: :alleigs
   allfreqs: :allfreqs

   reactionenumerate:
      energytype:[erxn(gas) hrxn(gas) grxn(gas) delta_solvation grxn(aq)] :energytype
      energytype:[kcal/mol kj/mol ev cm-1 ry hartree au] :energytype
      tablereactions:
         reaction: ... :reaction
         reaction: ... :reaction
         ...
      :tablereactions
      tablemethods:
         method: ... :method
         method: ... :method
         ...
      :tablemethods
   :reactionenumerate


   rotatebonds
   xyzinput:
      label:  :label
      xyzdata:
       ... xyz data ...
      :xyzdata
   :xyzinput


   submitHf: :submitHf
   nmrexp: :nmrexp

   findreplace: old text | new text :findreplace

   listnwjobs
   fetchnwjob: :fetchnwjob
   pushnwjob: :pushnwjob

   printcsv: :printcsv
   printeig: :printeig
   printfreq: :printfreq
   printxyz: :printxyz
   printjobinfo: :printjobinfo
   printnwout: :printnwout
   badids: :badids
   hup_string: 
   database:
   table:
   request_table:
   listallesmiles
   queuecheck                              
This software service and its documentation were developed at the Environmental Molecular Sciences Laboratory (EMSL) at Pacific Northwest National Laboratory, a multiprogram national laboratory, operated for the U.S. Department of Energy by Battelle under Contract Number DE-AC05-76RL01830. Support for this work was provided by the Department of Energy Office of Biological and Environmental Research, and Department of Defense environmental science and technology program (SERDP). THE SOFTWARE SERVICE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE SERVICE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE SERVICE.