Results from an EMSL Arrows Calculation
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The id(s) for emsiles = O=N(=O)C1=CC(=C([C@H]([CH]1)O)O)N(=O)=O theory{pspw4} xc{pbe0} basis{100.0 Ry} solvation_type{None} ^{-1} are: 76365 Use id=% instead of esmiles to print other entries. mformula = C6H5N2O6 iupac = O=N(=O)C1=CC(=C([C@H]([CH]1)O)O)N(=O)=O anion Search Links to Other Online Resources (may not be available): - Google Structure Search - EPA CompTox Database - Chemical Entities of Biological Interest (ChEBI) - NIH ChemIDplus - A TOXNET DATABASE - The Human Metabolome Database (HMDB) - OECD eChemPortal - Google Scholar +==================================================+ || Molecular Calculation || +==================================================+ Id = 76365 NWOutput = Link to NWChem Output (download) Datafiles: density.cube-541123-2022-11-3-12:37:2 (download) homo-restricted.cube-541123-2022-11-3-12:37:2 (download) lumo-restricted.cube-541123-2022-11-3-12:37:2 (download) image_resset: api/image_reset/76365 Calculation performed by Eric Bylaska - arrow4.emsl.pnl.gov Numbers of cpus used for calculation = 32 Calculation walltime = 1195641.300000 seconds (13 days 20 hours 7 minutes 21 seconds) +----------------+ | Energetic Data | +----------------+ Id = 76365 iupac = O=N(=O)C1=CC(=C([C@H]([CH]1)O)O)N(=O)=O anion mformula = C6H5N2O6 inchi = InChI=1S/C6H5N2O6/c9-5-2-3(7(11)12)1-4(6(5)10)8(13)14/h1-2,5,9-10H/t5-/m0/s1 inchikey = KGENDEWDTDAPPL-YFKPBYRVSA-N esmiles = O=N(=O)C1=CC(=C([C@H]([CH]1)O)O)N(=O)=O theory{pspw4} xc{pbe0} basis{100.0 Ry} solvation_type{None} ^{-1} calculation_type = ov theory = pspw4 xc = pbe0 basis = 100.0 Ry charge,mult = -1 1 energy = -152.655980 Hartrees enthalpy correct.= 0.138221 Hartrees entropy = 102.565 cal/mol-K solvation energy = 0.000 kcal/mol solvation_type = None Sitkoff cavity dispersion = 2.591 kcal/mol Honig cavity dispersion = 8.656 kcal/mol ASA solvent accesible surface area = 346.234 Angstrom2 ASA solvent accesible volume = 330.142 Angstrom3 +-----------------+ | Structural Data | +-----------------+
JSmol: an open-source HTML5 viewer for chemical structures in 3D
Number of Atoms = 19 Units are Angstrom for bonds and degrees for angles Type I J K L M Value ----------- ----- ----- ----- ----- ----- ---------- 1 Stretch O1 N2 1.21595 2 Stretch N2 O3 1.21629 3 Stretch N2 C4 1.45520 4 Stretch C4 C5 1.37344 5 Stretch C4 C14 1.36958 6 Stretch C5 C6 1.44630 7 Stretch C5 H15 1.06248 8 Stretch C6 O7 1.51473 9 Stretch C6 C8 1.46810 10 Stretch C6 H16 1.08486 11 Stretch O7 H17 0.93935 12 Stretch C8 O9 1.35177 13 Stretch C8 C10 1.36707 14 Stretch O9 H18 0.94001 15 Stretch C10 N11 1.44490 16 Stretch C10 C14 1.39640 17 Stretch N11 O12 1.21273 18 Stretch N11 O13 1.21760 19 Stretch C14 H19 1.05808 20 Bend O1 N2 O3 122.81146 21 Bend O1 N2 C4 118.21890 22 Bend O3 N2 C4 118.96964 23 Bend N2 C4 C5 117.99226 24 Bend N2 C4 C14 117.33370 25 Bend C5 C4 C14 124.62112 26 Bend C4 C5 C6 120.77113 27 Bend C4 C5 H15 119.65849 28 Bend C6 C5 H15 119.56469 29 Bend C5 C6 O7 114.93743 30 Bend C5 C6 C8 112.15516 31 Bend C5 C6 H16 113.16958 32 Bend O7 C6 C8 108.06405 33 Bend O7 C6 H16 97.69354 34 Bend C8 C6 H16 109.85421 35 Bend C6 O7 H17 104.38804 36 Bend C6 C8 O9 114.64399 37 Bend C6 C8 C10 121.74320 38 Bend O9 C8 C10 123.43878 39 Bend C8 O9 H18 104.88998 40 Bend C8 C10 N11 120.60019 41 Bend C8 C10 C14 122.78260 42 Bend N11 C10 C14 116.61414 43 Bend C10 N11 O12 118.99679 44 Bend C10 N11 O13 117.55806 45 Bend O12 N11 O13 123.44144 46 Bend C4 C14 C10 115.69638 47 Bend C4 C14 H19 123.00527 48 Bend C10 C14 H19 121.28548 49 Dihedral O1 N2 C4 C5 3.08421 50 Dihedral O1 N2 C4 C14 -179.43802 51 Dihedral N2 C4 C5 C6 -174.32513 52 Dihedral N2 C4 C5 H15 4.80280 53 Dihedral N2 C4 C14 C10 -174.54381 54 Dihedral N2 C4 C14 H19 4.16494 55 Dihedral O3 N2 C4 C5 -176.92140 56 Dihedral O3 N2 C4 C14 0.55637 57 Dihedral C4 C5 C6 O7 107.38907 58 Dihedral C4 C5 C6 C8 -16.56669 59 Dihedral C4 C5 C6 H16 -141.53592 60 Dihedral C4 C14 C10 C8 -4.04641 61 Dihedral C4 C14 C10 N11 176.58755 62 Dihedral C5 C4 C14 C10 2.74967 63 Dihedral C5 C4 C14 H19 -178.54157 64 Dihedral C5 C6 O7 H17 -46.97339 65 Dihedral C5 C6 C8 O9 -169.19431 66 Dihedral C5 C6 C8 C10 15.44468 67 Dihedral C6 C5 C4 C14 8.39776 68 Dihedral C6 C8 O9 H18 -23.56056 69 Dihedral C6 C8 C10 N11 173.63522 70 Dihedral C6 C8 C10 C14 -5.70629 71 Dihedral O7 C6 C5 H15 -71.73967 72 Dihedral O7 C6 C8 O9 63.09703 73 Dihedral O7 C6 C8 C10 -112.26398 74 Dihedral C8 C6 C5 H15 164.30456 75 Dihedral C8 C6 O7 H17 79.12031 76 Dihedral C8 C10 N11 O12 28.75984 77 Dihedral C8 C10 N11 O13 -151.91633 78 Dihedral C8 C10 C14 H19 177.22070 79 Dihedral O9 C8 C6 H16 -42.41772 80 Dihedral O9 C8 C10 N11 -1.31092 81 Dihedral O9 C8 C10 C14 179.34757 82 Dihedral C10 C8 C6 H16 142.22128 83 Dihedral C10 C8 O9 H18 151.71164 84 Dihedral N11 C10 C14 H19 -2.14534 85 Dihedral O12 N11 C10 C14 -151.85938 86 Dihedral O13 N11 C10 C14 27.46445 87 Dihedral C14 C4 C5 H15 -172.47431 88 Dihedral H15 C5 C6 H16 39.33533 89 Dihedral H16 C6 O7 H17 -167.01729
+-----------------+ | Eigenvalue Data | +-----------------+ Id = 76365 iupac = O=N(=O)C1=CC(=C([C@H]([CH]1)O)O)N(=O)=O anion mformula = C6H5N2O6 InChI = InChI=1S/C6H5N2O6/c9-5-2-3(7(11)12)1-4(6(5)10)8(13)14/h1-2,5,9-10H/t5-/m0/s1 smiles = O=N(=O)C1=CC(=C([C@H]([CH]1)O)O)N(=O)=O esmiles = O=N(=O)C1=CC(=C([C@H]([CH]1)O)O)N(=O)=O theory{pspw4} xc{pbe0} basis{100.0 Ry} solvation_type{None} ^{-1} theory = pspw4 xc = pbe0 basis = 100.0 Ry charge = -1 mult = 1 solvation_type = None twirl webpage = TwirlMol Link image webpage = GIF Image Link Eigevalue Spectra ---------- 3.22 eV -- -- -- - ---- ---- ---------- LUMO= 1.39 eV HOMO= -1.17 eV ++++++++++ ++++++++++ ++++ ++++ + + + + ++ ++++++++++ ++++ ++++ ++++++++++ ++++++++++ ++++++++++ ++++++++++ ++++ ++++ ++++ ++++ +++ ++ +++ ++++++++++ ++++ ++++ ++++++++++ ++++++++++ ++++++++++ ++++++++++ ++++++++++ ++++++++++ ++++++++++ ++++ ++++ ++++++++++ -31.19 eV ++++ ++++
spin eig occ ---------------------------- restricted -1.17 2.00 restricted -3.73 2.00 restricted -4.64 2.00 restricted -4.82 2.00 restricted -4.93 2.00 restricted -5.37 2.00 restricted -5.47 2.00 restricted -5.48 2.00 restricted -5.49 2.00 restricted -6.18 2.00 restricted -6.70 2.00 restricted -6.95 2.00 restricted -7.30 2.00 restricted -8.01 2.00 restricted -8.72 2.00 restricted -9.31 2.00 restricted -9.95 2.00 restricted -10.42 2.00 restricted -10.83 2.00 restricted -11.03 2.00 restricted -11.25 2.00 restricted -11.61 2.00 restricted -11.76 2.00 restricted -12.04 2.00 restricted -12.60 2.00 restricted -12.91 2.00 restricted -14.39 2.00 restricted -15.63 2.00 restricted -16.15 2.00 restricted -18.05 2.00 restricted -19.46 2.00 restricted -21.05 2.00 restricted -24.77 2.00 restricted -26.12 2.00 restricted -26.20 2.00 restricted -26.99 2.00 restricted -31.09 2.00 restricted -31.19 2.00 restricted 3.22 0.00 restricted 2.82 0.00 restricted 2.77 0.00 restricted 2.59 0.00 restricted 2.55 0.00 restricted 1.87 0.00 restricted 1.51 0.00 restricted 1.39 0.00
+----------------------------------------+ | Vibrational Density of States Analysis | +----------------------------------------+ Total number of frequencies = 57 Total number of negative frequencies = 0 Number of lowest frequencies = 13 (frequency threshold = 500 ) Exact dos norm = 51.000 Generating vibrational DOS Generating model vibrational DOS to have a proper norm 10.00 50.99 12.99 51.00 50.00 50.98 12.98 51.00 100.00 50.65 12.65 51.00 Generating IR Spectra Writing vibrational density of states (DOS) to vdos.dat Writing model vibrational density of states (DOS_FIXED) to vdos-model.dat Writing IR spectra to irdos.dat Temperature= 298.15 zero-point correction to energy = 79.168 kcal/mol ( 0.126163) vibrational contribution to enthalpy correction = 84.366 kcal/mol ( 0.134446) vibrational contribution to Entropy = 29.080 cal/mol-k hindered rotor enthalpy correction = 0.000 kcal/mol ( 0.000000) hindered rotor entropy correction = 0.000 cal/mol-k
DOS sigma = 10.000000 - vibrational DOS enthalpy correction = 0.134449 kcal/mol ( 84.368 kcal/mol) - model vibrational DOS enthalpy correction = 0.134461 kcal/mol ( 84.375 kcal/mol) - vibrational DOS Entropy = 0.000046 ( 29.117 cal/mol-k) - model vibrational DOS Entropy = 0.000046 ( 29.137 cal/mol-k) - original gas Energy = -152.655980 (-95793.073 kcal/mol) - original gas Enthalpy = -152.517759 (-95706.338 kcal/mol, delta= 0.000) - unajusted DOS gas Enthalpy = -152.517755 (-95706.336 kcal/mol, delta= 0.002) - model DOS gas Enthalpy = -152.517743 (-95706.328 kcal/mol, delta= 0.010) - original gas Entropy = 0.000163 ( 102.565 cal/mol-k,delta= 0.000) - unajusted DOS gas Entropy = 0.000164 ( 102.602 cal/mol-k,delta= 0.037) - model DOS gas Entropy = 0.000164 ( 102.623 cal/mol-k,delta= 0.058) - original gas Free Energy = -152.566490 (-95736.917 kcal/mol, delta= 0.000) - unadjusted DOS gas Free Energy = -152.566505 (-95736.926 kcal/mol, delta= -0.009) - model DOS gas Free Energy = -152.566502 (-95736.925 kcal/mol, delta= -0.008) - original sol Free Energy = -152.566490 (-95736.917 kcal/mol) - unadjusted DOS sol Free Energy = -152.566505 (-95736.926 kcal/mol) - model DOS sol Free Energy = -152.566502 (-95736.925 kcal/mol) DOS sigma = 50.000000 - vibrational DOS enthalpy correction = 0.134513 kcal/mol ( 84.408 kcal/mol) - model vibrational DOS enthalpy correction = 0.134530 kcal/mol ( 84.419 kcal/mol) - vibrational DOS Entropy = 0.000048 ( 30.136 cal/mol-k) - model vibrational DOS Entropy = 0.000048 ( 30.165 cal/mol-k) - original gas Energy = -152.655980 (-95793.073 kcal/mol) - original gas Enthalpy = -152.517759 (-95706.338 kcal/mol, delta= 0.000) - unajusted DOS gas Enthalpy = -152.517691 (-95706.295 kcal/mol, delta= 0.042) - model DOS gas Enthalpy = -152.517674 (-95706.285 kcal/mol, delta= 0.053) - original gas Entropy = 0.000163 ( 102.565 cal/mol-k,delta= 0.000) - unajusted DOS gas Entropy = 0.000165 ( 103.621 cal/mol-k,delta= 1.056) - model DOS gas Entropy = 0.000165 ( 103.650 cal/mol-k,delta= 1.085) - original gas Free Energy = -152.566490 (-95736.917 kcal/mol, delta= 0.000) - unadjusted DOS gas Free Energy = -152.566925 (-95737.190 kcal/mol, delta= -0.273) - model DOS gas Free Energy = -152.566922 (-95737.188 kcal/mol, delta= -0.271) - original sol Free Energy = -152.566490 (-95736.917 kcal/mol) - unadjusted DOS sol Free Energy = -152.566925 (-95737.190 kcal/mol) - model DOS sol Free Energy = -152.566922 (-95737.188 kcal/mol) DOS sigma = 100.000000 - vibrational DOS enthalpy correction = 0.134455 kcal/mol ( 84.372 kcal/mol) - model vibrational DOS enthalpy correction = 0.134843 kcal/mol ( 84.615 kcal/mol) - vibrational DOS Entropy = 0.000050 ( 31.504 cal/mol-k) - model vibrational DOS Entropy = 0.000051 ( 32.216 cal/mol-k) - original gas Energy = -152.655980 (-95793.073 kcal/mol) - original gas Enthalpy = -152.517759 (-95706.338 kcal/mol, delta= 0.000) - unajusted DOS gas Enthalpy = -152.517749 (-95706.332 kcal/mol, delta= 0.006) - model DOS gas Enthalpy = -152.517361 (-95706.088 kcal/mol, delta= 0.249) - original gas Entropy = 0.000163 ( 102.565 cal/mol-k,delta= 0.000) - unajusted DOS gas Entropy = 0.000167 ( 104.989 cal/mol-k,delta= 2.424) - model DOS gas Entropy = 0.000168 ( 105.701 cal/mol-k,delta= 3.136) - original gas Free Energy = -152.566490 (-95736.917 kcal/mol, delta= 0.000) - unadjusted DOS gas Free Energy = -152.567633 (-95737.634 kcal/mol, delta= -0.717) - model DOS gas Free Energy = -152.567583 (-95737.603 kcal/mol, delta= -0.686) - original sol Free Energy = -152.566490 (-95736.917 kcal/mol) - unadjusted DOS sol Free Energy = -152.567633 (-95737.634 kcal/mol) - model DOS sol Free Energy = -152.567583 (-95737.603 kcal/mol) Normal Mode Frequency (cm-1) IR Intensity (arbitrary) ----------- ---------------- ------------------------ 1 -0.000 0.295 2 -0.000 0.224 3 0.000 0.579 4 0.000 0.374 5 0.000 0.189 6 0.000 0.156 7 111.460 0.200 8 148.290 0.183 9 158.790 0.343 10 175.250 1.017 11 196.450 0.882 12 205.670 0.485 13 253.610 0.602 14 287.950 1.355 15 336.730 0.133 16 346.860 6.412 17 354.740 1.197 18 395.970 2.624 19 447.730 0.394 20 504.890 4.254 21 529.000 1.918 22 555.120 12.914 23 594.120 1.818 24 638.160 2.231 25 650.740 4.726 26 696.460 28.810 27 721.180 11.031 28 772.840 21.145 29 814.560 3.301 30 819.590 4.459 31 838.720 4.890 32 841.940 1.648 33 858.210 7.924 34 869.720 5.858 35 938.270 9.268 36 1072.020 5.496 37 1079.930 0.857 38 1162.820 1.697 39 1175.930 12.010 40 1242.690 10.370 41 1260.650 42.731 42 1316.500 9.268 43 1397.330 4.742 44 1406.940 30.089 45 1415.040 71.227 46 1423.860 14.262 47 1445.200 20.705 48 1545.910 15.532 49 1570.030 72.047 50 1587.490 66.795 51 1640.590 3.596 52 1677.670 4.474 53 3005.360 9.168 54 3229.530 0.534 55 3290.580 3.343 56 3683.380 23.039 57 3713.140 4.180 No Hindered Rotor Data +-------------------------------------+ | Reactions Contained in the Database | +-------------------------------------+ Reactions Containing INCHIKEY = KGENDEWDTDAPPL-YFKPBYRVSA-N Reactionid Erxn(gas) Hrxn(gas) Grxn(gas) delta_Solv Grxn(aq) ReactionType Reaction
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KEYWORDs - reaction: :reaction chinese_room: :chinese_room molecule: :molecule nmr: :nmr predict: :predict submitesmiles: :submitesmiles nosubmitmissingesmiles resubmitmissingesmiles submitmachines: :submitmachines useallentries nomodelcorrect eigenvalues: :eigenvalues frequencies: :frequencies nwoutput: :nwoutput xyzfile: :xyzfile alleigs: :alleigs allfreqs: :allfreqs reactionenumerate: energytype:[erxn(gas) hrxn(gas) grxn(gas) delta_solvation grxn(aq)] :energytype energytype:[kcal/mol kj/mol ev cm-1 ry hartree au] :energytype tablereactions: reaction: ... :reaction reaction: ... :reaction ... :tablereactions tablemethods: method: ... :method method: ... :method ... :tablemethods :reactionenumerate rotatebonds xyzinput: label: :label xyzdata: ... xyz data ... :xyzdata :xyzinput submitHf: :submitHf nmrexp: :nmrexp findreplace: old text | new text :findreplace listnwjobs fetchnwjob: :fetchnwjob pushnwjob: :pushnwjob printcsv: :printcsv printeig: :printeig printfreq: :printfreq printxyz: :printxyz printjobinfo: :printjobinfo printnwout: :printnwout badids: :badids hup_string: database: table: request_table: listallesmiles queuecheckThis software service and its documentation were developed at the Environmental Molecular Sciences Laboratory (EMSL) at Pacific Northwest National Laboratory, a multiprogram national laboratory, operated for the U.S. Department of Energy by Battelle under Contract Number DE-AC05-76RL01830. Support for this work was provided by the Department of Energy Office of Biological and Environmental Research, and Department of Defense environmental science and technology program (SERDP). THE SOFTWARE SERVICE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE SERVICE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE SERVICE.