Results from an EMSL Arrows Calculation
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The id(s) for emsiles = Br[Gd] theory{dft} xc{pbe} basis{unknown} solvation_type{COSMO} ^{1} basisHZ{Def2-TZVP} mult{9} are: 73833 Use id=% instead of esmiles to print other entries. mformula = Br1Gd1 iupac = Br[Gd] nonet radical cation PubChem = PubChem LCSS = Search Links to Other Online Resources (may not be available): - Google Structure Search - EPA CompTox Database - Chemical Entities of Biological Interest (ChEBI) - NIH ChemIDplus - A TOXNET DATABASE - The Human Metabolome Database (HMDB) - OECD eChemPortal - Google Scholar +==================================================+ || Molecular Calculation || +==================================================+ Id = 73833 NWOutput = Link to NWChem Output (download) Datafiles: homo-alpha.cube-721587-2022-5-8-23:6:29 (download) homo-beta.cube-721587-2022-5-8-23:6:29 (download) lumo-alpha.cube-721587-2022-5-8-23:6:29 (download) lumo-beta.cube-721587-2022-5-8-23:6:29 (download) image_resset: api/image_reset/73833 Calculation performed by Eric Bylaska - constance.pnl.gov Numbers of cpus used for calculation = 48 Calculation walltime = 1009.300000 seconds (0 days 0 hours 16 minutes 49 seconds) +----------------+ | Energetic Data | +----------------+ Id = 73833 iupac = Br[Gd] nonet radical cation mformula = Br1Gd1 inchi = InChI=1S/BrH.Gd/h1H;/q;+1/p-1 inchikey = HZHIZPRZFZBNHB-UHFFFAOYSA-M esmiles = Br[Gd] theory{dft} xc{pbe} basis{unknown} solvation_type{COSMO} ^{1} basisHZ{Def2-TZVP} mult{9} calculation_type = ovc theory = dft xc = pbe basis = unknown charge,mult = 1 9 energy = -3339.739139 Hartrees enthalpy correct.= 0.004361 Hartrees entropy = 62.562 cal/mol-K solvation energy = -91.700 kcal/mol solvation_type = COSMO Sitkoff cavity dispersion = 0.000 kcal/mol Honig cavity dispersion = 0.000 kcal/mol ASA solvent accesible surface area = 0.000 Angstrom2 ASA solvent accesible volume = 0.000 Angstrom3 +-----------------+ | Structural Data | +-----------------+
JSmol: an open-source HTML5 viewer for chemical structures in 3D
Number of Atoms = 2 Units are Angstrom for bonds and degrees for angles Type I J K L M Value ----------- ----- ----- ----- ----- ----- ---------- 1 Stretch Gd1 Br2 2.54406
+-----------------+ | Eigenvalue Data | +-----------------+ Id = 73833 iupac = Br[Gd] nonet radical cation mformula = Br1Gd1 InChI = InChI=1S/BrH.Gd/h1H;/q;+1/p-1 smiles = Br[Gd] esmiles = Br[Gd] theory{dft} xc{pbe} basis{unknown} solvation_type{COSMO} ^{1} basisHZ{Def2-TZVP} mult{9} theory = dft xc = pbe basis = unknown charge = 1 mult = 9 solvation_type = COSMO twirl webpage = TwirlMol Link image webpage = GIF Image Link Unrestricted Eigevalue Spectra alpha beta ---- ---- 67.04 eV -- -- -- - 65.90 eV --- -- --- --- -- --- ---- ---- ---- ---- ---- ---- --- -- --- ---------- -- -- -- - 7 - - - - 7 - - - - 6 - - - - --- -- --- ---------- --- -- --- - - - - -- 6 - - - - - - - - -- ---------- ---------- ---------- ---- ---- --- -- --- ---------- ---------- ---------- --- -- --- - - - - -- ---- ---- ---- ---- -- -- -- - --- -- --- --- -- --- 7 - - - - - - - - -- - - - - -- - - - - -- ---------- ---------- --- -- --- - - - - -- ---- ---- -- -- -- - -- -- -- - -- -- -- - -- -- -- - -- -- -- - -- -- -- - - - - - -- - - - - -- -- -- -- - 8 - - - - - - - - --LUMO= -2.37 eV 8 - - - -LUMO= -2.76 eV HOMO= -4.78 eV++++++++++ 9 + + + + HOMO= -7.46 eV+++ ++ +++ ++++++++++ ++++++++++ ++++++++++ -24.59 eV+++ ++ +++ -26.96 eV+++ ++ +++
spin eig occ ---------------------------- alpha -67.30 1.00 alpha -67.29 1.00 alpha -67.29 1.00 alpha -67.27 1.00 alpha -67.27 1.00 alpha -51.74 1.00 alpha -26.96 1.00 alpha -26.86 1.00 alpha -26.86 1.00 alpha -18.58 1.00 alpha -8.79 1.00 alpha -8.64 1.00 alpha -8.64 1.00 alpha -8.63 1.00 alpha -8.63 1.00 alpha -8.60 1.00 alpha -8.60 1.00 alpha -8.04 1.00 alpha -7.41 1.00 alpha -7.41 1.00 alpha -4.78 1.00 alpha -2.37 0.00 alpha -2.34 0.00 alpha -2.03 0.00 alpha -2.03 0.00 alpha -1.38 0.00 alpha -0.35 0.00 alpha -0.16 0.00 alpha -0.16 0.00 alpha 0.03 0.00 alpha 1.26 0.00 alpha 1.26 0.00 alpha 1.68 0.00 alpha 2.07 0.00 alpha 2.50 0.00 alpha 3.24 0.00 alpha 3.24 0.00 alpha 3.80 0.00 alpha 3.81 0.00 alpha 4.73 0.00 alpha 5.99 0.00 alpha 5.99 0.00 alpha 6.47 0.00 alpha 6.92 0.00 alpha 8.08 0.00 alpha 8.08 0.00 alpha 8.08 0.00 alpha 8.69 0.00 alpha 8.74 0.00 alpha 10.03 0.00 alpha 10.03 0.00 alpha 10.37 0.00 alpha 12.85 0.00 alpha 14.54 0.00 alpha 14.54 0.00 alpha 15.12 0.00 alpha 15.13 0.00 alpha 15.13 0.00 alpha 16.50 0.00 alpha 16.52 0.00 alpha 16.94 0.00 alpha 16.94 0.00 alpha 17.56 0.00 alpha 17.56 0.00 alpha 17.68 0.00 alpha 19.27 0.00 alpha 20.04 0.00 alpha 20.04 0.00 alpha 20.28 0.00 alpha 20.28 0.00 alpha 23.36 0.00 alpha 23.37 0.00 alpha 25.07 0.00 alpha 25.07 0.00 alpha 25.08 0.00 alpha 26.52 0.00 alpha 29.02 0.00 alpha 29.15 0.00 alpha 29.15 0.00 alpha 33.22 0.00 alpha 43.98 0.00 alpha 44.60 0.00 alpha 44.61 0.00 alpha 44.82 0.00 alpha 44.82 0.00 alpha 45.82 0.00 alpha 45.83 0.00 alpha 46.11 0.00 alpha 46.11 0.00 alpha 46.59 0.00 alpha 48.99 0.00 alpha 49.70 0.00 alpha 49.70 0.00 alpha 50.74 0.00 alpha 50.74 0.00 alpha 51.04 0.00 alpha 51.05 0.00 alpha 52.43 0.00 alpha 52.43 0.00 alpha 52.49 0.00 alpha 52.88 0.00 alpha 52.88 0.00 alpha 53.67 0.00 alpha 53.67 0.00 alpha 55.54 0.00 alpha 56.13 0.00 alpha 56.13 0.00 alpha 58.18 0.00 alpha 58.18 0.00 alpha 60.33 0.00 alpha 61.55 0.00 alpha 61.55 0.00 alpha 64.44 0.00 alpha 64.44 0.00 alpha 65.89 0.00 alpha 65.90 0.00 beta -67.30 1.00 beta -67.29 1.00 beta -67.29 1.00 beta -67.27 1.00 beta -67.27 1.00 beta -46.96 1.00 beta -24.59 1.00 beta -24.30 1.00 beta -24.30 1.00 beta -18.50 1.00 beta -7.92 1.00 beta -7.46 1.00 beta -7.46 1.00 beta -2.76 0.00 beta -2.76 0.00 beta -2.74 0.00 beta -2.74 0.00 beta -2.69 0.00 beta -2.69 0.00 beta -2.69 0.00 beta -1.86 0.00 beta -0.93 0.00 beta -0.91 0.00 beta -0.91 0.00 beta -0.89 0.00 beta -0.25 0.00 beta 0.10 0.00 beta 0.55 0.00 beta 0.55 0.00 beta 1.45 0.00 beta 1.47 0.00 beta 1.47 0.00 beta 2.23 0.00 beta 2.73 0.00 beta 3.89 0.00 beta 3.90 0.00 beta 3.98 0.00 beta 3.98 0.00 beta 5.00 0.00 beta 6.32 0.00 beta 6.32 0.00 beta 6.57 0.00 beta 7.07 0.00 beta 8.21 0.00 beta 8.27 0.00 beta 8.27 0.00 beta 9.97 0.00 beta 10.03 0.00 beta 10.91 0.00 beta 10.91 0.00 beta 11.15 0.00 beta 13.37 0.00 beta 14.91 0.00 beta 14.91 0.00 beta 15.15 0.00 beta 15.15 0.00 beta 15.34 0.00 beta 17.20 0.00 beta 17.22 0.00 beta 17.88 0.00 beta 18.05 0.00 beta 18.05 0.00 beta 18.69 0.00 beta 18.69 0.00 beta 20.04 0.00 beta 20.48 0.00 beta 20.48 0.00 beta 20.96 0.00 beta 20.96 0.00 beta 24.01 0.00 beta 24.03 0.00 beta 25.10 0.00 beta 25.10 0.00 beta 25.25 0.00 beta 27.37 0.00 beta 29.11 0.00 beta 29.84 0.00 beta 29.84 0.00 beta 33.97 0.00 beta 44.50 0.00 beta 45.88 0.00 beta 45.88 0.00 beta 45.92 0.00 beta 45.93 0.00 beta 46.68 0.00 beta 46.69 0.00 beta 46.94 0.00 beta 46.94 0.00 beta 47.33 0.00 beta 50.06 0.00 beta 51.46 0.00 beta 51.46 0.00 beta 51.76 0.00 beta 51.76 0.00 beta 51.81 0.00 beta 51.81 0.00 beta 52.73 0.00 beta 52.88 0.00 beta 52.88 0.00 beta 53.67 0.00 beta 53.67 0.00 beta 54.46 0.00 beta 54.48 0.00 beta 56.39 0.00 beta 56.58 0.00 beta 56.58 0.00 beta 59.35 0.00 beta 59.35 0.00 beta 60.60 0.00 beta 61.58 0.00 beta 61.58 0.00 beta 67.04 0.00 beta 67.04 0.00
+----------------------------------------+ | Vibrational Density of States Analysis | +----------------------------------------+ Total number of frequencies = 6 Total number of negative frequencies = 0 Number of lowest frequencies = 1 (frequency threshold = 500 ) Exact dos norm = 0.000 Generating vibrational DOS Generating model vibrational DOS to have a proper norm 10.00 1.00 1.00 0.00 50.00 1.00 1.00 0.00 100.00 0.99 0.99 0.00 Generating IR Spectra Writing vibrational density of states (DOS) to vdos.dat Writing model vibrational density of states (DOS_FIXED) to vdos-model.dat Writing IR spectra to irdos.dat Temperature= 298.15 zero-point correction to energy = 0.361 kcal/mol ( 0.000575) vibrational contribution to enthalpy correction = 0.664 kcal/mol ( 0.001058) vibrational contribution to Entropy = 1.712 cal/mol-k hindered rotor enthalpy correction = 0.000 kcal/mol ( 0.000000) hindered rotor entropy correction = 0.000 cal/mol-k
DOS sigma = 10.000000 - vibrational DOS enthalpy correction = 0.001058 kcal/mol ( 0.664 kcal/mol) - model vibrational DOS enthalpy correction = 0.000000 kcal/mol ( 0.000 kcal/mol) - vibrational DOS Entropy = 0.000003 ( 1.713 cal/mol-k) - model vibrational DOS Entropy = 0.000000 ( 0.000 cal/mol-k) - original gas Energy = -3339.739139 (-2095717.934 kcal/mol) - original gas Enthalpy = -3339.734778 (-2095715.197 kcal/mol, delta= 0.000) - unajusted DOS gas Enthalpy = -3339.734778 (-2095715.197 kcal/mol, delta= 0.000) - model DOS gas Enthalpy = -3339.735836 (-2095715.861 kcal/mol, delta= -0.664) - original gas Entropy = 0.000100 ( 62.562 cal/mol-k,delta= 0.000) - unajusted DOS gas Entropy = 0.000100 ( 62.564 cal/mol-k,delta= 0.002) - model DOS gas Entropy = 0.000097 ( 60.850 cal/mol-k,delta= -1.712) - original gas Free Energy = -3339.764503 (-2095733.850 kcal/mol, delta= 0.000) - unadjusted DOS gas Free Energy = -3339.764504 (-2095733.851 kcal/mol, delta= -0.000) - model DOS gas Free Energy = -3339.764748 (-2095734.004 kcal/mol, delta= -0.153) - original sol Free Energy = -3339.910637 (-2095825.550 kcal/mol) - unadjusted DOS sol Free Energy = -3339.910637 (-2095825.551 kcal/mol) - model DOS sol Free Energy = -3339.910881 (-2095825.704 kcal/mol) DOS sigma = 50.000000 - vibrational DOS enthalpy correction = 0.001062 kcal/mol ( 0.666 kcal/mol) - model vibrational DOS enthalpy correction = 0.000000 kcal/mol ( 0.000 kcal/mol) - vibrational DOS Entropy = 0.000003 ( 1.757 cal/mol-k) - model vibrational DOS Entropy = 0.000000 ( 0.000 cal/mol-k) - original gas Energy = -3339.739139 (-2095717.934 kcal/mol) - original gas Enthalpy = -3339.734778 (-2095715.197 kcal/mol, delta= 0.000) - unajusted DOS gas Enthalpy = -3339.734774 (-2095715.195 kcal/mol, delta= 0.002) - model DOS gas Enthalpy = -3339.735836 (-2095715.861 kcal/mol, delta= -0.664) - original gas Entropy = 0.000100 ( 62.562 cal/mol-k,delta= 0.000) - unajusted DOS gas Entropy = 0.000100 ( 62.607 cal/mol-k,delta= 0.045) - model DOS gas Entropy = 0.000097 ( 60.850 cal/mol-k,delta= -1.712) - original gas Free Energy = -3339.764503 (-2095733.850 kcal/mol, delta= 0.000) - unadjusted DOS gas Free Energy = -3339.764521 (-2095733.861 kcal/mol, delta= -0.011) - model DOS gas Free Energy = -3339.764748 (-2095734.004 kcal/mol, delta= -0.153) - original sol Free Energy = -3339.910637 (-2095825.550 kcal/mol) - unadjusted DOS sol Free Energy = -3339.910654 (-2095825.561 kcal/mol) - model DOS sol Free Energy = -3339.910881 (-2095825.704 kcal/mol) DOS sigma = 100.000000 - vibrational DOS enthalpy correction = 0.001069 kcal/mol ( 0.671 kcal/mol) - model vibrational DOS enthalpy correction = 0.000000 kcal/mol ( 0.000 kcal/mol) - vibrational DOS Entropy = 0.000003 ( 1.920 cal/mol-k) - model vibrational DOS Entropy = 0.000000 ( 0.000 cal/mol-k) - original gas Energy = -3339.739139 (-2095717.934 kcal/mol) - original gas Enthalpy = -3339.734778 (-2095715.197 kcal/mol, delta= 0.000) - unajusted DOS gas Enthalpy = -3339.734767 (-2095715.190 kcal/mol, delta= 0.007) - model DOS gas Enthalpy = -3339.735836 (-2095715.861 kcal/mol, delta= -0.664) - original gas Entropy = 0.000100 ( 62.562 cal/mol-k,delta= 0.000) - unajusted DOS gas Entropy = 0.000100 ( 62.770 cal/mol-k,delta= 0.208) - model DOS gas Entropy = 0.000097 ( 60.850 cal/mol-k,delta= -1.712) - original gas Free Energy = -3339.764503 (-2095733.850 kcal/mol, delta= 0.000) - unadjusted DOS gas Free Energy = -3339.764591 (-2095733.905 kcal/mol, delta= -0.055) - model DOS gas Free Energy = -3339.764748 (-2095734.004 kcal/mol, delta= -0.153) - original sol Free Energy = -3339.910637 (-2095825.550 kcal/mol) - unadjusted DOS sol Free Energy = -3339.910724 (-2095825.605 kcal/mol) - model DOS sol Free Energy = -3339.910881 (-2095825.704 kcal/mol) Normal Mode Frequency (cm-1) IR Intensity (arbitrary) ----------- ---------------- ------------------------ 1 0.000 10.843 2 0.000 10.843 3 0.000 0.605 4 0.000 0.605 5 0.000 4.983 6 252.580 32.120 No Hindered Rotor Data +-------------------------------------+ | Reactions Contained in the Database | +-------------------------------------+ Reactions Containing INCHIKEY = HZHIZPRZFZBNHB-UHFFFAOYSA-M Reactionid Erxn(gas) Hrxn(gas) Grxn(gas) delta_Solv Grxn(aq) ReactionType Reaction
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KEYWORDs - reaction: :reaction chinese_room: :chinese_room molecule: :molecule nmr: :nmr predict: :predict submitesmiles: :submitesmiles nosubmitmissingesmiles resubmitmissingesmiles submitmachines: :submitmachines useallentries nomodelcorrect eigenvalues: :eigenvalues frequencies: :frequencies nwoutput: :nwoutput xyzfile: :xyzfile alleigs: :alleigs allfreqs: :allfreqs reactionenumerate: energytype:[erxn(gas) hrxn(gas) grxn(gas) delta_solvation grxn(aq)] :energytype energytype:[kcal/mol kj/mol ev cm-1 ry hartree au] :energytype tablereactions: reaction: ... :reaction reaction: ... :reaction ... :tablereactions tablemethods: method: ... :method method: ... :method ... :tablemethods :reactionenumerate rotatebonds xyzinput: label: :label xyzdata: ... xyz data ... :xyzdata :xyzinput submitHf: :submitHf nmrexp: :nmrexp findreplace: old text | new text :findreplace listnwjobs fetchnwjob: :fetchnwjob pushnwjob: :pushnwjob printcsv: :printcsv printeig: :printeig printfreq: :printfreq printxyz: :printxyz printjobinfo: :printjobinfo printnwout: :printnwout badids: :badids hup_string: database: table: request_table: listallesmiles queuecheckThis software service and its documentation were developed at the Environmental Molecular Sciences Laboratory (EMSL) at Pacific Northwest National Laboratory, a multiprogram national laboratory, operated for the U.S. Department of Energy by Battelle under Contract Number DE-AC05-76RL01830. Support for this work was provided by the Department of Energy Office of Biological and Environmental Research, and Department of Defense environmental science and technology program (SERDP). THE SOFTWARE SERVICE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE SERVICE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE SERVICE.