Results from an EMSL Arrows Calculation
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The id(s) for emsiles = C1=CC=C2C=CC=CC2=C1 ^{0} are: 6754 Use id=% instead of esmiles to print other entries. mformula = C10H8 iupac = naphthalene PubChem = 931 PubChem LCSS = 931 cas = 91-20-3 kegg = C00829 Search Links to Other Online Resources (may not be available): - Google Structure Search - EPA CompTox Database - Chemical Entities of Biological Interest (ChEBI) - NIH ChemIDplus - A TOXNET DATABASE - The Human Metabolome Database (HMDB) - OECD eChemPortal - Google Scholar +==================================================+ || Molecular Calculation || +==================================================+ Id = 6754 NWOutput = Link to NWChem Output (download) Datafiles: dft-b3lyp-C10H8-57671.out-2016-7-31-22:54:34 (download) lumo-restricted.cube-2016-7-31-22:54:34 (download) homo-restricted.cube-2016-7-31-22:54:34 (download) mo_orbital_nwchemarrows.out-273002-2017-12-5-10:37:4 (download) image_resset: api/image_reset/6754 +----------------+ | Energetic Data | +----------------+ Id = 6754 iupac = naphthalene mformula = C10H8 inchi = InChI=1S/C10H8/c1-2-6-10-8-4-3-7-9(10)5-1/h1-8H inchikey = UFWIBTONFRDIAS-UHFFFAOYSA-N esmiles = C1=CC=C2C=CC=CC2=C1 ^{0} calculation_type = ovc theory = dft xc = b3lyp basis = 6-311++G(2d,2p) charge,mult = 0 1 energy = -386.009677 Hartrees enthalpy correct.= 0.155166 Hartrees entropy = 81.828 cal/mol-K solvation energy = -2.301 kcal/mol solvation_type = COSMO Sitkoff cavity dispersion = 2.409 kcal/mol Honig cavity dispersion = 7.743 kcal/mol ASA solvent accesible surface area = 309.717 Angstrom2 ASA solvent accesible volume = 287.890 Angstrom3 +-----------------+ | Structural Data | +-----------------+
JSmol: an open-source HTML5 viewer for chemical structures in 3D
Number of Atoms = 18 Units are Angstrom for bonds and degrees for angles Type I J K L M Value ----------- ----- ----- ----- ----- ----- ---------- 1 Stretch C1 C2 1.37116 2 Stretch C1 C10 1.41255 3 Stretch C1 H11 1.08149 4 Stretch C2 C3 1.41697 5 Stretch C2 H12 1.08237 6 Stretch C3 C4 1.41698 7 Stretch C3 C8 1.42850 8 Stretch C4 C5 1.37120 9 Stretch C4 H13 1.08238 10 Stretch C5 C6 1.41261 11 Stretch C5 H14 1.08153 12 Stretch C6 C7 1.37125 13 Stretch C6 H15 1.08154 14 Stretch C7 C8 1.41704 15 Stretch C7 H16 1.08244 16 Stretch C8 C9 1.41703 17 Stretch C9 C10 1.37121 18 Stretch C9 H17 1.08243 19 Stretch C10 H18 1.08150 20 Bend C2 C1 C10 120.28827 21 Bend C2 C1 H11 120.08932 22 Bend C10 C1 H11 119.62241 23 Bend C1 C2 C3 120.87123 24 Bend C1 C2 H12 120.33823 25 Bend C3 C2 H12 118.79054 26 Bend C2 C3 C4 122.31343 27 Bend C2 C3 C8 118.84278 28 Bend C4 C3 C8 118.84379 29 Bend C3 C4 C5 120.87146 30 Bend C3 C4 H13 118.79130 31 Bend C5 C4 H13 120.33725 32 Bend C4 C5 C6 120.28714 33 Bend C4 C5 H14 120.09038 34 Bend C6 C5 H14 119.62249 35 Bend C5 C6 C7 120.28562 36 Bend C5 C6 H15 119.62438 37 Bend C7 C6 H15 120.09000 38 Bend C6 C7 C8 120.86890 39 Bend C6 C7 H16 120.33865 40 Bend C8 C7 H16 118.79245 41 Bend C3 C8 C7 118.84309 42 Bend C3 C8 C9 118.84238 43 Bend C7 C8 C9 122.31453 44 Bend C8 C9 C10 120.86863 45 Bend C8 C9 H17 118.79201 46 Bend C10 C9 H17 120.33936 47 Bend C1 C10 C9 120.28672 48 Bend C1 C10 H18 119.62423 49 Bend C9 C10 H18 120.08905 50 Dihedral C1 C2 C3 C4 179.99841 51 Dihedral C1 C2 C3 C8 -0.00086 52 Dihedral C1 C10 C9 C8 -0.00049 53 Dihedral C1 C10 C9 H17 -179.99953 54 Dihedral C2 C1 C10 C9 0.00086 55 Dihedral C2 C1 C10 H18 -179.99818 56 Dihedral C2 C3 C4 C5 179.99775 57 Dihedral C2 C3 C4 H13 -0.00358 58 Dihedral C2 C3 C8 C7 -179.99873 59 Dihedral C2 C3 C8 C9 0.00121 60 Dihedral C3 C2 C1 C10 -0.00017 61 Dihedral C3 C2 C1 H11 179.99968 62 Dihedral C3 C4 C5 C6 0.00209 63 Dihedral C3 C4 C5 H14 -179.99843 64 Dihedral C3 C8 C7 C6 -0.00013 65 Dihedral C3 C8 C7 H16 -179.99835 66 Dihedral C3 C8 C9 C10 -0.00055 67 Dihedral C3 C8 C9 H17 179.99850 68 Dihedral C4 C3 C2 H12 -0.00229 69 Dihedral C4 C3 C8 C7 0.00197 70 Dihedral C4 C3 C8 C9 -179.99809 71 Dihedral C4 C5 C6 C7 -0.00018 72 Dihedral C4 C5 C6 H15 179.99910 73 Dihedral C5 C4 C3 C8 -0.00297 74 Dihedral C5 C6 C7 C8 -0.00079 75 Dihedral C5 C6 C7 H16 179.99739 76 Dihedral C6 C5 C4 H13 -179.99656 77 Dihedral C6 C7 C8 C9 179.99993 78 Dihedral C7 C6 C5 H14 -179.99966 79 Dihedral C7 C8 C9 C10 179.99939 80 Dihedral C7 C8 C9 H17 -0.00156 81 Dihedral C8 C3 C2 H12 179.99843 82 Dihedral C8 C3 C4 H13 179.99570 83 Dihedral C8 C7 C6 H15 179.99994 84 Dihedral C8 C9 C10 H18 179.99855 85 Dihedral C9 C8 C7 H16 0.00172 86 Dihedral C9 C10 C1 H11 -179.99899 87 Dihedral C10 C1 C2 H12 -179.99946 88 Dihedral H11 C1 C2 H12 0.00040 89 Dihedral H11 C1 C10 H18 0.00197 90 Dihedral H13 C4 C5 H14 0.00292 91 Dihedral H14 C5 C6 H15 -0.00039 92 Dihedral H15 C6 C7 H16 -0.00188 93 Dihedral H17 C9 C10 H18 -0.00049
+-----------------+ | Eigenvalue Data | +-----------------+ Id = 6754 iupac = naphthalene mformula = C10H8 InChI = InChI=1S/C10H8/c1-2-6-10-8-4-3-7-9(10)5-1/h1-8H smiles = c1cc2ccccc2cc1 esmiles = C1=CC=C2C=CC=CC2=C1 ^{0} theory = dft xc = b3lyp basis = 6-311++G(2d,2p) charge = 0 mult = 1 solvation_type = COSMO twirl webpage = TwirlMol Link image webpage = GIF Image Link Eigevalue Spectra ---------- 13.65 eV -- -- -- - -- -- -- - ---- ---- -- -- -- - ---- ---- -- -- -- - --- -- --- -- -- -- - - - - - -- -- -- -- - 6 - - - - 6 - - - - 6 - - - - - - - - -- -- -- -- - --- -- --- --- -- --- ---------- ---------- LUMO= -1.59 eV HOMO= -6.38 eV ++++++++++ ++++++++++ ++++++++++ +++ ++ +++ ++++++++++ ++++ ++++ ++++ ++++ ++++ ++++ ++++++++++ ++++ ++++ ++++++++++ ++++ ++++ ++++++++++ ++++++++++ ++++++++++ ++++++++++ -24.19 eV ++++++++++
spin eig occ ---------------------------- restricted -24.19 2.00 restricted -22.73 2.00 restricted -21.39 2.00 restricted -20.51 2.00 restricted -19.91 2.00 restricted -17.33 2.00 restricted -16.96 2.00 restricted -16.50 2.00 restricted -14.30 2.00 restricted -14.13 2.00 restricted -13.75 2.00 restricted -12.38 2.00 restricted -12.33 2.00 restricted -11.69 2.00 restricted -11.61 2.00 restricted -11.15 2.00 restricted -11.13 2.00 restricted -10.30 2.00 restricted -9.53 2.00 restricted -9.41 2.00 restricted -9.26 2.00 restricted -8.25 2.00 restricted -7.14 2.00 restricted -6.38 2.00 restricted -1.59 0.00 restricted -0.86 0.00 restricted -0.19 0.00 restricted -0.04 0.00 restricted 0.12 0.00 restricted 0.22 0.00 restricted 0.71 0.00 restricted 0.72 0.00 restricted 1.14 0.00 restricted 1.31 0.00 restricted 1.35 0.00 restricted 1.43 0.00 restricted 1.78 0.00 restricted 1.92 0.00 restricted 1.95 0.00 restricted 2.24 0.00 restricted 2.33 0.00 restricted 2.79 0.00 restricted 3.04 0.00 restricted 3.08 0.00 restricted 3.09 0.00 restricted 3.12 0.00 restricted 3.18 0.00 restricted 3.24 0.00 restricted 3.46 0.00 restricted 3.50 0.00 restricted 3.55 0.00 restricted 3.75 0.00 restricted 3.76 0.00 restricted 4.05 0.00 restricted 4.24 0.00 restricted 4.32 0.00 restricted 4.35 0.00 restricted 4.57 0.00 restricted 4.58 0.00 restricted 5.24 0.00 restricted 5.46 0.00 restricted 5.50 0.00 restricted 5.51 0.00 restricted 5.66 0.00 restricted 5.67 0.00 restricted 5.91 0.00 restricted 6.29 0.00 restricted 6.31 0.00 restricted 6.49 0.00 restricted 6.62 0.00 restricted 6.70 0.00 restricted 7.04 0.00 restricted 7.29 0.00 restricted 7.64 0.00 restricted 7.66 0.00 restricted 7.94 0.00 restricted 8.09 0.00 restricted 8.49 0.00 restricted 8.62 0.00 restricted 8.70 0.00 restricted 9.32 0.00 restricted 9.41 0.00 restricted 9.46 0.00 restricted 9.69 0.00 restricted 10.05 0.00 restricted 11.01 0.00 restricted 11.44 0.00 restricted 11.85 0.00 restricted 11.99 0.00 restricted 12.01 0.00 restricted 12.11 0.00 restricted 12.50 0.00 restricted 12.92 0.00 restricted 13.08 0.00 restricted 13.20 0.00 restricted 13.65 0.00
+----------------------------------------+ | Vibrational Density of States Analysis | +----------------------------------------+ Total number of frequencies = 54 Total number of negative frequencies = 0 Number of lowest frequencies = 6 (frequency threshold = 500 ) Exact dos norm = 48.000 Generating vibrational DOS Generating model vibrational DOS to have a proper norm 10.00 48.01 6.00 48.00 50.00 48.00 6.00 48.00 100.00 47.93 5.93 48.00 Generating IR Spectra Writing vibrational density of states (DOS) to vdos.dat Writing model vibrational density of states (DOS_FIXED) to vdos-model.dat Writing IR spectra to irdos.dat Temperature= 298.15 zero-point correction to energy = 92.526 kcal/mol ( 0.147449) vibrational contribution to enthalpy correction = 94.999 kcal/mol ( 0.151391) vibrational contribution to Entropy = 12.481 cal/mol-k hindered rotor enthalpy correction = 0.000 kcal/mol ( 0.000000) hindered rotor entropy correction = 0.000 cal/mol-k
DOS sigma = 10.000000 - vibrational DOS enthalpy correction = 0.151393 kcal/mol ( 95.000 kcal/mol) - model vibrational DOS enthalpy correction = 0.151379 kcal/mol ( 94.992 kcal/mol) - vibrational DOS Entropy = 0.000020 ( 12.493 cal/mol-k) - model vibrational DOS Entropy = 0.000020 ( 12.477 cal/mol-k) - original gas Energy = -386.009677 (-242224.727 kcal/mol) - original gas Enthalpy = -385.854511 (-242127.359 kcal/mol, delta= 0.000) - unajusted DOS gas Enthalpy = -385.854509 (-242127.358 kcal/mol, delta= 0.001) - model DOS gas Enthalpy = -385.854523 (-242127.367 kcal/mol, delta= -0.008) - original gas Entropy = 0.000130 ( 81.828 cal/mol-k,delta= 0.000) - unajusted DOS gas Entropy = 0.000130 ( 81.840 cal/mol-k,delta= 0.012) - model DOS gas Entropy = 0.000130 ( 81.824 cal/mol-k,delta= -0.004) - original gas Free Energy = -385.893390 (-242151.756 kcal/mol, delta= 0.000) - unadjusted DOS gas Free Energy = -385.893394 (-242151.759 kcal/mol, delta= -0.003) - model DOS gas Free Energy = -385.893400 (-242151.763 kcal/mol, delta= -0.007) - original sol Free Energy = -385.897058 (-242154.058 kcal/mol) - unadjusted DOS sol Free Energy = -385.897062 (-242154.060 kcal/mol) - model DOS sol Free Energy = -385.897068 (-242154.064 kcal/mol) DOS sigma = 50.000000 - vibrational DOS enthalpy correction = 0.151436 kcal/mol ( 95.028 kcal/mol) - model vibrational DOS enthalpy correction = 0.151436 kcal/mol ( 95.028 kcal/mol) - vibrational DOS Entropy = 0.000020 ( 12.813 cal/mol-k) - model vibrational DOS Entropy = 0.000020 ( 12.814 cal/mol-k) - original gas Energy = -386.009677 (-242224.727 kcal/mol) - original gas Enthalpy = -385.854511 (-242127.359 kcal/mol, delta= 0.000) - unajusted DOS gas Enthalpy = -385.854466 (-242127.331 kcal/mol, delta= 0.028) - model DOS gas Enthalpy = -385.854465 (-242127.331 kcal/mol, delta= 0.029) - original gas Entropy = 0.000130 ( 81.828 cal/mol-k,delta= 0.000) - unajusted DOS gas Entropy = 0.000131 ( 82.160 cal/mol-k,delta= 0.332) - model DOS gas Entropy = 0.000131 ( 82.161 cal/mol-k,delta= 0.333) - original gas Free Energy = -385.893390 (-242151.756 kcal/mol, delta= 0.000) - unadjusted DOS gas Free Energy = -385.893503 (-242151.827 kcal/mol, delta= -0.071) - model DOS gas Free Energy = -385.893503 (-242151.827 kcal/mol, delta= -0.071) - original sol Free Energy = -385.897058 (-242154.058 kcal/mol) - unadjusted DOS sol Free Energy = -385.897170 (-242154.128 kcal/mol) - model DOS sol Free Energy = -385.897170 (-242154.128 kcal/mol) DOS sigma = 100.000000 - vibrational DOS enthalpy correction = 0.151514 kcal/mol ( 95.076 kcal/mol) - model vibrational DOS enthalpy correction = 0.151597 kcal/mol ( 95.128 kcal/mol) - vibrational DOS Entropy = 0.000022 ( 13.643 cal/mol-k) - model vibrational DOS Entropy = 0.000022 ( 13.746 cal/mol-k) - original gas Energy = -386.009677 (-242224.727 kcal/mol) - original gas Enthalpy = -385.854511 (-242127.359 kcal/mol, delta= 0.000) - unajusted DOS gas Enthalpy = -385.854388 (-242127.282 kcal/mol, delta= 0.077) - model DOS gas Enthalpy = -385.854305 (-242127.230 kcal/mol, delta= 0.129) - original gas Entropy = 0.000130 ( 81.828 cal/mol-k,delta= 0.000) - unajusted DOS gas Entropy = 0.000132 ( 82.990 cal/mol-k,delta= 1.162) - model DOS gas Entropy = 0.000132 ( 83.093 cal/mol-k,delta= 1.265) - original gas Free Energy = -385.893390 (-242151.756 kcal/mol, delta= 0.000) - unadjusted DOS gas Free Energy = -385.893819 (-242152.025 kcal/mol, delta= -0.269) - model DOS gas Free Energy = -385.893785 (-242152.004 kcal/mol, delta= -0.248) - original sol Free Energy = -385.897058 (-242154.058 kcal/mol) - unadjusted DOS sol Free Energy = -385.897487 (-242154.327 kcal/mol) - model DOS sol Free Energy = -385.897453 (-242154.306 kcal/mol) Normal Mode Frequency (cm-1) IR Intensity (arbitrary) ----------- ---------------- ------------------------ 1 -0.000 0.002 2 -0.000 0.006 3 -0.000 0.014 4 0.000 0.584 5 0.000 1.226 6 0.000 3.844 7 175.910 5.465 8 188.640 0.047 9 369.180 9.002 10 398.020 0.004 11 481.500 0.002 12 488.480 36.212 13 522.040 0.001 14 528.610 0.029 15 633.930 0.021 16 644.750 18.224 17 730.410 0.000 18 782.590 0.001 19 791.040 0.139 20 800.050 169.055 21 821.910 18.527 22 849.980 0.003 23 895.840 0.000 24 959.770 0.001 25 963.380 0.000 26 981.740 4.275 27 992.700 0.008 28 997.190 0.000 29 1055.440 0.001 30 1061.370 10.987 31 1164.420 0.110 32 1171.430 0.199 33 1177.640 0.000 34 1188.410 0.002 35 1234.880 5.067 36 1275.460 0.002 37 1298.880 30.478 38 1390.540 0.154 39 1401.710 10.104 40 1424.500 33.897 41 1502.450 0.014 42 1504.390 0.009 43 1556.590 70.126 44 1608.640 0.000 45 1643.430 56.890 46 1666.160 0.001 47 3154.840 1.777 48 3158.830 14.352 49 3163.250 38.035 50 3169.160 0.649 51 3176.970 0.064 52 3192.500 0.002 53 3203.560 0.083 54 3210.530 0.307 No Hindered Rotor Data +-------------------------------------+ | Reactions Contained in the Database | +-------------------------------------+ Reactions Containing INCHIKEY = UFWIBTONFRDIAS-UHFFFAOYSA-N Reactionid Erxn(gas) Hrxn(gas) Grxn(gas) delta_Solv Grxn(aq) ReactionType Reaction 16785 17.069 11.012 12.646 0.000 12.646 AB + CD --> AD + BC "c2ccc1ccccc1c2 theory{pspw4} + Cl theory{pspw4} --> Clc1cccc2ccccc12 theory{pspw4} + [H][H] theory{pspw4}" 16675 8.675 11.934 22.623 0.000 22.623 AB + CD --> CABD "c2ccc1ccccc1c2 theory{pspw4} + Cl theory{pspw4} --> ClC2C=Cc1ccccc1C2 theory{pspw4}" 16674 8.675 11.934 22.623 0.000 22.623 AB + CD --> CABD "c2ccc1ccccc1c2 theory{pspw4} + Cl theory{pspw4} --> ClC2C=Cc1ccccc1C2 theory{pspw4}" 16664 16.889 10.719 12.309 0.000 12.309 AB + CD --> AD + BC "c2ccc1ccccc1c2 theory{pspw4} + Cl theory{pspw4} --> Clc2ccc1ccccc1c2 theory{pspw4} + [H][H] theory{pspw4}" 8003 -63.333 -63.672 -63.055 -4.098 -67.153 AB + CD --> AD + BC "naphthalene + hydrogen peroxide --> 1-naphthol + water" 2656 207.665 195.459 186.793 0.000 186.793 AB + CD --> AD + BC "c2ccc1ccccc1c2 theory{pspw4} --> C1=CC2=C[C]3[C]1C=CC2=C3 theory{pspw4} + [H][H] theory{pspw4}" 2281 17.068 10.993 12.627 0.000 12.627 AB + CD --> AD + BC "c2ccc1ccccc1c2 theory{pspw4} + Cl theory{pspw4} --> Clc1cccc2ccccc12 theory{pspw4} + [H][H] theory{pspw4}" 2202 16.889 10.700 12.290 0.000 12.290 AB + CD --> AD + BC "c2ccc1ccccc1c2 theory{pspw4} + Cl theory{pspw4} --> Clc2ccc1ccccc1c2 theory{pspw4} + [H][H] theory{pspw4}" 1765 8.675 11.915 22.603 0.000 22.603 AB + CD --> CABD "c2ccc1ccccc1c2 theory{pspw4} + Cl theory{pspw4} --> ClC2C=Cc1ccccc1C2 theory{pspw4}" 1764 8.675 11.915 22.603 0.000 22.603 AB + CD --> CABD "c2ccc1ccccc1c2 theory{pspw4} + Cl theory{pspw4} --> ClC2C=Cc1ccccc1C2 theory{pspw4}" 1224 -64.422 -64.076 -63.732 -4.258 -67.990 AB + CD --> AD + BC "naphthalene + hydrogen peroxide --> 1-naphthol + water" 1150 207.665 195.459 186.793 0.000 186.793 AB + CD --> AD + BC "c2ccc1ccccc1c2 theory{pspw4} --> C1=CC2=C[C]3[C]1C=CC2=C3 theory{pspw4} + [H][H] theory{pspw4}" 1148 16.889 10.700 12.290 0.000 12.290 AB + CD --> AD + BC "c2ccc1ccccc1c2 theory{pspw4} + Cl theory{pspw4} --> Clc2ccc1ccccc1c2 theory{pspw4} + [H][H] theory{pspw4}" 1141 17.068 10.993 12.627 0.000 12.627 AB + CD --> AD + BC "c2ccc1ccccc1c2 theory{pspw4} + Cl theory{pspw4} --> Clc1cccc2ccccc12 theory{pspw4} + [H][H] theory{pspw4}"
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KEYWORDs - reaction: :reaction chinese_room: :chinese_room molecule: :molecule nmr: :nmr predict: :predict submitesmiles: :submitesmiles nosubmitmissingesmiles resubmitmissingesmiles submitmachines: :submitmachines useallentries nomodelcorrect eigenvalues: :eigenvalues frequencies: :frequencies nwoutput: :nwoutput xyzfile: :xyzfile alleigs: :alleigs allfreqs: :allfreqs reactionenumerate: energytype:[erxn(gas) hrxn(gas) grxn(gas) delta_solvation grxn(aq)] :energytype energytype:[kcal/mol kj/mol ev cm-1 ry hartree au] :energytype tablereactions: reaction: ... :reaction reaction: ... :reaction ... :tablereactions tablemethods: method: ... :method method: ... :method ... :tablemethods :reactionenumerate rotatebonds xyzinput: label: :label xyzdata: ... xyz data ... :xyzdata :xyzinput submitHf: :submitHf nmrexp: :nmrexp findreplace: old text | new text :findreplace listnwjobs fetchnwjob: :fetchnwjob pushnwjob: :pushnwjob printcsv: :printcsv printeig: :printeig printfreq: :printfreq printxyz: :printxyz printjobinfo: :printjobinfo printnwout: :printnwout badids: :badids hup_string: database: table: request_table: listallesmiles queuecheckThis software service and its documentation were developed at the Environmental Molecular Sciences Laboratory (EMSL) at Pacific Northwest National Laboratory, a multiprogram national laboratory, operated for the U.S. Department of Energy by Battelle under Contract Number DE-AC05-76RL01830. Support for this work was provided by the Department of Energy Office of Biological and Environmental Research, and Department of Defense environmental science and technology program (SERDP). THE SOFTWARE SERVICE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE SERVICE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE SERVICE.