Results from an EMSL Arrows Calculation
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The id(s) for emsiles = O=C1C=CC(=O)[C]([CH]1)N([O])O theory{dft} xc{b3lyp} basis{6-311++G(2d,2p)} solvation_type{COSMO} ^{-1} are: 59754 Use id=% instead of esmiles to print other entries. mformula = C6H4N1O4 iupac = O=C1C=CC(=O)[C]([CH]1)N([O])O anion Search Links to Other Online Resources (may not be available): - Google Structure Search - EPA CompTox Database - Chemical Entities of Biological Interest (ChEBI) - NIH ChemIDplus - A TOXNET DATABASE - The Human Metabolome Database (HMDB) - OECD eChemPortal - Google Scholar +==================================================+ || Molecular Calculation || +==================================================+ Id = 59754 NWOutput = Link to NWChem Output (download) Datafiles: homo-restricted.cube-903388-2021-1-6-12:37:2 (download) lumo-restricted.cube-903388-2021-1-6-12:37:2 (download) cosmo.xyz-903388-2021-1-6-12:37:2 (download) mo_orbital_nwchemarrows.out-370285-2021-1-27-23:37:2 (download) image_resset: api/image_reset/59754 Calculation performed by Eric Bylaska - arrow10.emsl.pnl.gov Numbers of cpus used for calculation = 32 Calculation walltime = 26946.400000 seconds (0 days 7 hours 29 minutes 6 seconds) +----------------+ | Energetic Data | +----------------+ Id = 59754 iupac = O=C1C=CC(=O)[C]([CH]1)N([O])O anion mformula = C6H4N1O4 inchi = InChI=1S/C6H4NO4/c8-4-1-2-6(9)5(3-4)7(10)11/h1-3,10H inchikey = OOHAUONATLQPBQ-UHFFFAOYSA-N esmiles = O=C1C=CC(=O)[C]([CH]1)N([O])O theory{dft} xc{b3lyp} basis{6-311++G(2d,2p)} solvation_type{COSMO} ^{-1} calculation_type = ovc theory = dft xc = b3lyp basis = 6-311++G(2d,2p) charge,mult = -1 1 energy = -586.821405 Hartrees enthalpy correct.= 0.106109 Hartrees entropy = 93.871 cal/mol-K solvation energy = -63.967 kcal/mol solvation_type = COSMO Sitkoff cavity dispersion = 2.373 kcal/mol Honig cavity dispersion = 7.564 kcal/mol ASA solvent accesible surface area = 302.545 Angstrom2 ASA solvent accesible volume = 289.760 Angstrom3 +-----------------+ | Structural Data | +-----------------+
JSmol: an open-source HTML5 viewer for chemical structures in 3D
Number of Atoms = 15 Units are Angstrom for bonds and degrees for angles Type I J K L M Value ----------- ----- ----- ----- ----- ----- ---------- 1 Stretch O1 C2 1.26082 2 Stretch C2 C3 1.40800 3 Stretch C2 C8 1.48025 4 Stretch C3 C4 1.42668 5 Stretch C3 H13 1.08091 6 Stretch C4 C5 1.49103 7 Stretch C4 N9 1.34325 8 Stretch C5 O6 1.22979 9 Stretch C5 C7 1.46748 10 Stretch C7 C8 1.34398 11 Stretch C7 H14 1.08298 12 Stretch C8 H15 1.08436 13 Stretch N9 O10 1.44641 14 Stretch N9 O12 1.23618 15 Stretch O10 H11 0.97182 16 Bend O1 C2 C3 125.81903 17 Bend O1 C2 C8 118.72657 18 Bend C3 C2 C8 115.43976 19 Bend C2 C3 C4 122.67764 20 Bend C2 C3 H13 116.11035 21 Bend C4 C3 H13 120.69531 22 Bend C3 C4 C5 121.04845 23 Bend C3 C4 N9 121.91973 24 Bend C5 C4 N9 116.83130 25 Bend C4 C5 O6 125.11395 26 Bend C4 C5 C7 114.18217 27 Bend O6 C5 C7 120.68437 28 Bend C5 C7 C8 122.83919 29 Bend C5 C7 H14 114.85505 30 Bend C8 C7 H14 122.29978 31 Bend C2 C8 C7 123.56468 32 Bend C2 C8 H15 115.29479 33 Bend C7 C8 H15 121.11611 34 Bend C4 N9 O10 115.53848 35 Bend C4 N9 O12 131.15548 36 Bend O10 N9 O12 113.30598 37 Bend N9 O10 H11 103.60089 38 Dihedral O1 C2 C3 C4 -177.55657 39 Dihedral O1 C2 C3 H13 -5.75994 40 Dihedral O1 C2 C8 C7 175.36221 41 Dihedral O1 C2 C8 H15 -2.85479 42 Dihedral C2 C3 C4 C5 3.42747 43 Dihedral C2 C3 C4 N9 -171.26282 44 Dihedral C2 C8 C7 C5 0.98953 45 Dihedral C2 C8 C7 H14 -178.07511 46 Dihedral C3 C2 C8 C7 -3.32737 47 Dihedral C3 C2 C8 H15 178.45563 48 Dihedral C3 C4 C5 O6 176.11621 49 Dihedral C3 C4 C5 C7 -5.48884 50 Dihedral C3 C4 N9 O10 7.69631 51 Dihedral C3 C4 N9 O12 -172.40736 52 Dihedral C4 C3 C2 C8 1.02624 53 Dihedral C4 C5 C7 C8 3.36232 54 Dihedral C4 C5 C7 H14 -177.50901 55 Dihedral C4 N9 O10 H11 22.70980 56 Dihedral C5 C4 C3 H13 -168.00346 57 Dihedral C5 C4 N9 O10 -167.20643 58 Dihedral C5 C4 N9 O12 12.68990 59 Dihedral C5 C7 C8 H15 179.10652 60 Dihedral O6 C5 C4 N9 -8.93367 61 Dihedral O6 C5 C7 C8 -178.16436 62 Dihedral O6 C5 C7 H14 0.96431 63 Dihedral C7 C5 C4 N9 169.46127 64 Dihedral C8 C2 C3 H13 172.82288 65 Dihedral N9 C4 C3 H13 17.30625 66 Dihedral H11 O10 N9 O12 -157.20522 67 Dihedral H14 C7 C8 H15 0.04188
+-----------------+ | Eigenvalue Data | +-----------------+ Id = 59754 iupac = O=C1C=CC(=O)[C]([CH]1)N([O])O anion mformula = C6H4N1O4 InChI = InChI=1S/C6H4NO4/c8-4-1-2-6(9)5(3-4)7(10)11/h1-3,10H smiles = O=C1C=CC(=O)[C]([CH]1)N([O])O esmiles = O=C1C=CC(=O)[C]([CH]1)N([O])O theory{dft} xc{b3lyp} basis{6-311++G(2d,2p)} solvation_type{COSMO} ^{-1} theory = dft xc = b3lyp basis = 6-311++G(2d,2p) charge = -1 mult = 1 solvation_type = COSMO twirl webpage = TwirlMol Link image webpage = GIF Image Link Eigevalue Spectra ---- ---- 65.96 eV ---------- --- -- --- ---- ---- -- -- -- - ---------- --- -- --- --- -- --- ---- ---- -- -- -- - ---- ---- -- -- -- - - - - - -- - - - - -- 6 - - - - 7 - - - - 7 - - - - 9 - - - - - - - - -- -- -- -- - -- -- -- - 6 - - - - - - - - -- 8 - - - - 7 - - - - 6 - - - - 6 - - - - 8 - - - - 13 - - - - 10 - - - - 13 - - - - 9 - - - - - - - - -- ---------- LUMO= -3.02 eV HOMO= -5.31 eV ++++++++++ ++++++++++ ++ ++ ++ + ++ ++ ++ + ++ ++ ++ + + + + + ++ ++++++++++ ++++ ++++ ++++++++++ ++++++++++ ++++++++++ +++ ++ +++ -32.42 eV ++++++++++
spin eig occ ---------------------------- restricted -32.42 2.00 restricted -28.86 2.00 restricted -28.59 2.00 restricted -27.48 2.00 restricted -24.02 2.00 restricted -22.33 2.00 restricted -20.00 2.00 restricted -18.87 2.00 restricted -17.41 2.00 restricted -16.52 2.00 restricted -15.22 2.00 restricted -14.27 2.00 restricted -14.13 2.00 restricted -13.54 2.00 restricted -13.41 2.00 restricted -12.58 2.00 restricted -11.97 2.00 restricted -11.71 2.00 restricted -11.55 2.00 restricted -11.17 2.00 restricted -10.70 2.00 restricted -10.49 2.00 restricted -9.61 2.00 restricted -8.90 2.00 restricted -8.25 2.00 restricted -7.85 2.00 restricted -7.53 2.00 restricted -7.01 2.00 restricted -5.31 2.00 restricted -3.02 0.00 restricted -0.30 0.00 restricted -0.24 0.00 restricted 0.21 0.00 restricted 0.38 0.00 restricted 0.47 0.00 restricted 0.88 0.00 restricted 1.04 0.00 restricted 1.33 0.00 restricted 1.42 0.00 restricted 1.64 0.00 restricted 1.85 0.00 restricted 2.14 0.00 restricted 2.23 0.00 restricted 2.44 0.00 restricted 2.86 0.00 restricted 3.06 0.00 restricted 3.13 0.00 restricted 3.22 0.00 restricted 3.43 0.00 restricted 3.49 0.00 restricted 3.52 0.00 restricted 3.64 0.00 restricted 3.79 0.00 restricted 3.96 0.00 restricted 3.98 0.00 restricted 4.57 0.00 restricted 4.60 0.00 restricted 4.82 0.00 restricted 4.98 0.00 restricted 5.06 0.00 restricted 5.14 0.00 restricted 5.23 0.00 restricted 5.37 0.00 restricted 5.77 0.00 restricted 5.92 0.00 restricted 6.37 0.00 restricted 6.62 0.00 restricted 6.77 0.00 restricted 6.93 0.00 restricted 7.02 0.00 restricted 7.05 0.00 restricted 7.39 0.00 restricted 7.61 0.00 restricted 7.76 0.00 restricted 7.86 0.00 restricted 7.94 0.00 restricted 8.28 0.00 restricted 8.34 0.00 restricted 8.47 0.00 restricted 8.71 0.00 restricted 8.78 0.00 restricted 9.09 0.00 restricted 9.51 0.00 restricted 9.73 0.00 restricted 9.94 0.00 restricted 10.22 0.00 restricted 10.44 0.00 restricted 10.56 0.00 restricted 10.91 0.00 restricted 10.95 0.00 restricted 11.62 0.00 restricted 12.05 0.00 restricted 12.42 0.00 restricted 12.71 0.00 restricted 13.31 0.00 restricted 13.60 0.00 restricted 13.68 0.00 restricted 14.14 0.00 restricted 14.51 0.00 restricted 14.70 0.00 restricted 15.20 0.00 restricted 15.60 0.00 restricted 15.63 0.00 restricted 15.87 0.00 restricted 16.13 0.00 restricted 16.45 0.00 restricted 16.58 0.00 restricted 16.85 0.00 restricted 17.12 0.00 restricted 17.30 0.00 restricted 17.48 0.00 restricted 17.82 0.00 restricted 18.34 0.00 restricted 18.41 0.00 restricted 18.75 0.00 restricted 19.02 0.00 restricted 19.27 0.00 restricted 19.50 0.00 restricted 19.88 0.00 restricted 20.65 0.00 restricted 21.18 0.00 restricted 21.24 0.00 restricted 21.69 0.00 restricted 21.94 0.00 restricted 22.39 0.00 restricted 22.59 0.00 restricted 22.98 0.00 restricted 24.32 0.00 restricted 24.45 0.00 restricted 24.72 0.00 restricted 25.36 0.00 restricted 25.67 0.00 restricted 25.83 0.00 restricted 26.51 0.00 restricted 27.11 0.00 restricted 27.55 0.00 restricted 27.83 0.00 restricted 28.36 0.00 restricted 28.49 0.00 restricted 28.87 0.00 restricted 29.17 0.00 restricted 29.48 0.00 restricted 29.52 0.00 restricted 29.91 0.00 restricted 30.13 0.00 restricted 30.28 0.00 restricted 30.41 0.00 restricted 30.64 0.00 restricted 30.84 0.00 restricted 31.20 0.00 restricted 31.47 0.00 restricted 31.86 0.00 restricted 32.14 0.00 restricted 32.26 0.00 restricted 32.65 0.00 restricted 33.11 0.00 restricted 33.48 0.00 restricted 33.70 0.00 restricted 33.91 0.00 restricted 34.14 0.00 restricted 34.35 0.00 restricted 34.48 0.00 restricted 34.98 0.00 restricted 35.40 0.00 restricted 35.88 0.00 restricted 36.13 0.00 restricted 36.27 0.00 restricted 36.44 0.00 restricted 37.22 0.00 restricted 37.44 0.00 restricted 37.87 0.00 restricted 38.03 0.00 restricted 38.29 0.00 restricted 39.28 0.00 restricted 39.54 0.00 restricted 39.59 0.00 restricted 40.54 0.00 restricted 40.80 0.00 restricted 41.12 0.00 restricted 41.66 0.00 restricted 41.72 0.00 restricted 42.45 0.00 restricted 43.55 0.00 restricted 44.74 0.00 restricted 45.31 0.00 restricted 45.83 0.00 restricted 46.44 0.00 restricted 46.56 0.00 restricted 47.22 0.00 restricted 48.16 0.00 restricted 49.03 0.00 restricted 49.23 0.00 restricted 50.73 0.00 restricted 51.03 0.00 restricted 52.37 0.00 restricted 52.86 0.00 restricted 53.56 0.00 restricted 54.96 0.00 restricted 55.24 0.00 restricted 56.38 0.00 restricted 56.63 0.00 restricted 57.95 0.00 restricted 58.28 0.00 restricted 59.58 0.00 restricted 60.60 0.00 restricted 60.85 0.00 restricted 62.15 0.00 restricted 64.97 0.00 restricted 65.96 0.00
+----------------------------------------+ | Vibrational Density of States Analysis | +----------------------------------------+ Total number of frequencies = 45 Total number of negative frequencies = 0 Number of lowest frequencies = 11 (frequency threshold = 500 ) Exact dos norm = 39.000 Generating vibrational DOS Generating model vibrational DOS to have a proper norm 10.00 38.99 11.00 39.00 50.00 38.94 10.94 39.00 100.00 38.57 10.57 39.00 Generating IR Spectra Writing vibrational density of states (DOS) to vdos.dat Writing model vibrational density of states (DOS_FIXED) to vdos-model.dat Writing IR spectra to irdos.dat Temperature= 298.15 zero-point correction to energy = 60.239 kcal/mol ( 0.095997) vibrational contribution to enthalpy correction = 64.216 kcal/mol ( 0.102334) vibrational contribution to Entropy = 22.819 cal/mol-k hindered rotor enthalpy correction = 0.000 kcal/mol ( 0.000000) hindered rotor entropy correction = 0.000 cal/mol-k
DOS sigma = 10.000000 - vibrational DOS enthalpy correction = 0.102337 kcal/mol ( 64.217 kcal/mol) - model vibrational DOS enthalpy correction = 0.102346 kcal/mol ( 64.223 kcal/mol) - vibrational DOS Entropy = 0.000036 ( 22.858 cal/mol-k) - model vibrational DOS Entropy = 0.000036 ( 22.873 cal/mol-k) - original gas Energy = -586.821405 (-368235.989 kcal/mol) - original gas Enthalpy = -586.715296 (-368169.404 kcal/mol, delta= 0.000) - unajusted DOS gas Enthalpy = -586.715294 (-368169.403 kcal/mol, delta= 0.002) - model DOS gas Enthalpy = -586.715284 (-368169.397 kcal/mol, delta= 0.008) - original gas Entropy = 0.000150 ( 93.871 cal/mol-k,delta= 0.000) - unajusted DOS gas Entropy = 0.000150 ( 93.910 cal/mol-k,delta= 0.039) - model DOS gas Entropy = 0.000150 ( 93.925 cal/mol-k,delta= 0.054) - original gas Free Energy = -586.759898 (-368197.392 kcal/mol, delta= 0.000) - unadjusted DOS gas Free Energy = -586.759914 (-368197.402 kcal/mol, delta= -0.010) - model DOS gas Free Energy = -586.759911 (-368197.400 kcal/mol, delta= -0.008) - original sol Free Energy = -586.861836 (-368261.359 kcal/mol) - unadjusted DOS sol Free Energy = -586.861852 (-368261.369 kcal/mol) - model DOS sol Free Energy = -586.861849 (-368261.368 kcal/mol) DOS sigma = 50.000000 - vibrational DOS enthalpy correction = 0.102346 kcal/mol ( 64.223 kcal/mol) - model vibrational DOS enthalpy correction = 0.102418 kcal/mol ( 64.268 kcal/mol) - vibrational DOS Entropy = 0.000038 ( 23.793 cal/mol-k) - model vibrational DOS Entropy = 0.000038 ( 23.908 cal/mol-k) - original gas Energy = -586.821405 (-368235.989 kcal/mol) - original gas Enthalpy = -586.715296 (-368169.404 kcal/mol, delta= 0.000) - unajusted DOS gas Enthalpy = -586.715285 (-368169.397 kcal/mol, delta= 0.008) - model DOS gas Enthalpy = -586.715212 (-368169.351 kcal/mol, delta= 0.053) - original gas Entropy = 0.000150 ( 93.871 cal/mol-k,delta= 0.000) - unajusted DOS gas Entropy = 0.000151 ( 94.845 cal/mol-k,delta= 0.974) - model DOS gas Entropy = 0.000151 ( 94.960 cal/mol-k,delta= 1.089) - original gas Free Energy = -586.759898 (-368197.392 kcal/mol, delta= 0.000) - unadjusted DOS gas Free Energy = -586.760348 (-368197.675 kcal/mol, delta= -0.283) - model DOS gas Free Energy = -586.760331 (-368197.664 kcal/mol, delta= -0.272) - original sol Free Energy = -586.861836 (-368261.359 kcal/mol) - unadjusted DOS sol Free Energy = -586.862287 (-368261.642 kcal/mol) - model DOS sol Free Energy = -586.862269 (-368261.631 kcal/mol) DOS sigma = 100.000000 - vibrational DOS enthalpy correction = 0.102193 kcal/mol ( 64.127 kcal/mol) - model vibrational DOS enthalpy correction = 0.102693 kcal/mol ( 64.441 kcal/mol) - vibrational DOS Entropy = 0.000038 ( 23.544 cal/mol-k) - model vibrational DOS Entropy = 0.000039 ( 24.340 cal/mol-k) - original gas Energy = -586.821405 (-368235.989 kcal/mol) - original gas Enthalpy = -586.715296 (-368169.404 kcal/mol, delta= 0.000) - unajusted DOS gas Enthalpy = -586.715438 (-368169.493 kcal/mol, delta= -0.089) - model DOS gas Enthalpy = -586.714938 (-368169.179 kcal/mol, delta= 0.225) - original gas Entropy = 0.000150 ( 93.871 cal/mol-k,delta= 0.000) - unajusted DOS gas Entropy = 0.000151 ( 94.596 cal/mol-k,delta= 0.725) - model DOS gas Entropy = 0.000152 ( 95.391 cal/mol-k,delta= 1.520) - original gas Free Energy = -586.759898 (-368197.392 kcal/mol, delta= 0.000) - unadjusted DOS gas Free Energy = -586.760384 (-368197.697 kcal/mol, delta= -0.305) - model DOS gas Free Energy = -586.760262 (-368197.620 kcal/mol, delta= -0.228) - original sol Free Energy = -586.861836 (-368261.359 kcal/mol) - unadjusted DOS sol Free Energy = -586.862322 (-368261.664 kcal/mol) - model DOS sol Free Energy = -586.862200 (-368261.588 kcal/mol) Normal Mode Frequency (cm-1) IR Intensity (arbitrary) ----------- ---------------- ------------------------ 1 0.000 0.072 2 0.000 0.250 3 0.000 0.985 4 0.000 1.073 5 0.000 0.397 6 0.000 0.670 7 85.730 1.471 8 104.810 0.570 9 144.390 1.219 10 222.540 0.867 11 294.380 0.315 12 333.280 1.200 13 378.640 1.075 14 408.620 7.815 15 419.650 4.220 16 423.300 3.674 17 473.260 5.058 18 526.360 0.964 19 552.470 0.151 20 604.420 3.788 21 615.580 3.505 22 685.820 8.874 23 709.970 3.221 24 786.600 1.899 25 793.280 2.787 26 862.520 7.576 27 870.840 13.445 28 939.010 1.247 29 1008.060 0.603 30 1112.020 6.001 31 1193.460 21.170 32 1224.740 34.885 33 1295.840 16.116 34 1311.640 7.160 35 1354.420 8.777 36 1404.380 1.781 37 1428.560 0.695 38 1554.840 121.646 39 1565.060 65.247 40 1640.070 40.672 41 1693.710 25.449 42 3146.960 7.769 43 3164.550 7.110 44 3172.750 3.447 45 3651.450 3.083 No Hindered Rotor Data +-------------------------------------+ | Reactions Contained in the Database | +-------------------------------------+ Reactions Containing INCHIKEY = OOHAUONATLQPBQ-UHFFFAOYSA-N Reactionid Erxn(gas) Hrxn(gas) Grxn(gas) delta_Solv Grxn(aq) ReactionType Reaction 5646 18.067 17.354 17.374 2.895 20.269 AB + C --> AC + B "Oc1ccc(c(c1)N(=O)=O)[O] ^{-1} --> [O][C]1C=CC(=O)C(=C1)N(O)[O] ^{-1}"
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KEYWORDs - reaction: :reaction chinese_room: :chinese_room molecule: :molecule nmr: :nmr predict: :predict submitesmiles: :submitesmiles nosubmitmissingesmiles resubmitmissingesmiles submitmachines: :submitmachines useallentries nomodelcorrect eigenvalues: :eigenvalues frequencies: :frequencies nwoutput: :nwoutput xyzfile: :xyzfile alleigs: :alleigs allfreqs: :allfreqs reactionenumerate: energytype:[erxn(gas) hrxn(gas) grxn(gas) delta_solvation grxn(aq)] :energytype energytype:[kcal/mol kj/mol ev cm-1 ry hartree au] :energytype tablereactions: reaction: ... :reaction reaction: ... :reaction ... :tablereactions tablemethods: method: ... :method method: ... :method ... :tablemethods :reactionenumerate rotatebonds xyzinput: label: :label xyzdata: ... xyz data ... :xyzdata :xyzinput submitHf: :submitHf nmrexp: :nmrexp findreplace: old text | new text :findreplace listnwjobs fetchnwjob: :fetchnwjob pushnwjob: :pushnwjob printcsv: :printcsv printeig: :printeig printfreq: :printfreq printxyz: :printxyz printjobinfo: :printjobinfo printnwout: :printnwout badids: :badids hup_string: database: table: request_table: listallesmiles queuecheckThis software service and its documentation were developed at the Environmental Molecular Sciences Laboratory (EMSL) at Pacific Northwest National Laboratory, a multiprogram national laboratory, operated for the U.S. Department of Energy by Battelle under Contract Number DE-AC05-76RL01830. Support for this work was provided by the Department of Energy Office of Biological and Environmental Research, and Department of Defense environmental science and technology program (SERDP). THE SOFTWARE SERVICE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE SERVICE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE SERVICE.