Results from an EMSL Arrows Calculation
EMSL Arrows is a revolutionary approach to materials and chemical simulations that uses NWChem and chemical computational databases to make materials and chemical modeling accessible via a broad spectrum of digital communications including posts to web APIs, social networks, and traditional email. |
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The id(s) for emsiles = N#N.[SH] theory{pspw4} xc{pbe} basis{100.0 Ry} solvation_type{None} ^{-1} are: 48047 Use id=% instead of esmiles to print other entries. mformula = H1N2S1 iupac = N#N.[SH] anion PubChem = PubChem LCSS = Search Links to Other Online Resources (may not be available): - Google Structure Search - EPA CompTox Database - Chemical Entities of Biological Interest (ChEBI) - NIH ChemIDplus - A TOXNET DATABASE - The Human Metabolome Database (HMDB) - OECD eChemPortal - Google Scholar +==================================================+ || Molecular Calculation || +==================================================+ Id = 48047 NWOutput = Link to NWChem Output (download) Datafiles: density.cube-735964-2018-9-13-11:38:42 (download) homo-restricted.cube-735964-2018-9-13-11:38:42 (download) lumo-restricted.cube-735964-2018-9-13-11:38:42 (download) image_resset: api/image_reset/48047 Calculation performed by Eric Bylaska - arrow1.emsl.pnl.gov Numbers of cpus used for calculation = 32 Calculation walltime = 2667.400000 seconds (0 days 0 hours 44 minutes 27 seconds) +----------------+ | Energetic Data | +----------------+ Id = 48047 iupac = N#N.[SH] anion mformula = H1N2S1 inchi = InChI=1S/N2.HS/c1-2;/h;1H inchikey = VHLOXWRZXCHQDD-UHFFFAOYSA-N esmiles = N#N.[SH] theory{pspw4} xc{pbe} basis{100.0 Ry} solvation_type{None} ^{-1} calculation_type = ov theory = pspw4 xc = pbe basis = 100.0 Ry charge,mult = -1 1 energy = -30.776469 Hartrees enthalpy correct.= 0.019460 Hartrees entropy = 71.629 cal/mol-K solvation energy = 0.000 kcal/mol solvation_type = None Sitkoff cavity dispersion = 1.899 kcal/mol Honig cavity dispersion = 5.197 kcal/mol ASA solvent accesible surface area = 207.871 Angstrom2 ASA solvent accesible volume = 208.243 Angstrom3 +-----------------+ | Structural Data | +-----------------+
JSmol: an open-source HTML5 viewer for chemical structures in 3D
Number of Atoms = 4 Units are Angstrom for bonds and degrees for angles Type I J K L M Value ----------- ----- ----- ----- ----- ----- ---------- 1 Stretch N1 N2 1.09987 2 Stretch S3 H4 1.34493
+-----------------+ | Eigenvalue Data | +-----------------+ Id = 48047 iupac = N#N.[SH] anion mformula = H1N2S1 InChI = InChI=1S/N2.HS/c1-2;/h;1H smiles = N#N.[SH] esmiles = N#N.[SH] theory{pspw4} xc{pbe} basis{100.0 Ry} solvation_type{None} ^{-1} theory = pspw4 xc = pbe basis = 100.0 Ry charge = -1 mult = 1 solvation_type = None twirl webpage = TwirlMol Link image webpage = GIF Image Link Eigevalue Spectra -- -- -- - 2.73 eV --- -- --- ---------- LUMO= 1.57 eV HOMO= 0.67 eV ++++ ++++ ++++++++++ ++++++++++ ++++++++++ ++++++++++ ++++++++++ ++++++++++ -23.96 eV ++++++++++
spin eig occ ---------------------------- restricted 0.67 2.00 restricted 0.67 2.00 restricted -2.84 2.00 restricted -6.06 2.00 restricted -7.33 2.00 restricted -7.40 2.00 restricted -9.25 2.00 restricted -10.34 2.00 restricted -23.96 2.00 restricted 2.73 0.00 restricted 2.68 0.00 restricted 2.65 0.00 restricted 2.62 0.00 restricted 2.35 0.00 restricted 2.23 0.00 restricted 2.13 0.00 restricted 1.57 0.00
+----------------------------------------+ | Vibrational Density of States Analysis | +----------------------------------------+ Total number of frequencies = 12 Total number of negative frequencies = 0 Number of lowest frequencies = 4 (frequency threshold = 500 ) Exact dos norm = 6.000 Generating vibrational DOS Generating model vibrational DOS to have a proper norm 10.00 6.00 4.00 6.00 50.00 5.75 3.75 6.00 100.00 5.62 3.62 6.00 Generating IR Spectra Writing vibrational density of states (DOS) to vdos.dat Writing model vibrational density of states (DOS_FIXED) to vdos-model.dat Writing IR spectra to irdos.dat Temperature= 298.15 zero-point correction to energy = 8.608 kcal/mol ( 0.013717) vibrational contribution to enthalpy correction = 9.843 kcal/mol ( 0.015685) vibrational contribution to Entropy = 9.286 cal/mol-k hindered rotor enthalpy correction = 0.000 kcal/mol ( 0.000000) hindered rotor entropy correction = 0.000 cal/mol-k
DOS sigma = 10.000000 - vibrational DOS enthalpy correction = 0.015686 kcal/mol ( 9.843 kcal/mol) - model vibrational DOS enthalpy correction = 0.015689 kcal/mol ( 9.845 kcal/mol) - vibrational DOS Entropy = 0.000015 ( 9.401 cal/mol-k) - model vibrational DOS Entropy = 0.000015 ( 9.407 cal/mol-k) - original gas Energy = -30.776469 (-19312.526 kcal/mol) - original gas Enthalpy = -30.757009 (-19300.314 kcal/mol, delta= 0.000) - unajusted DOS gas Enthalpy = -30.757009 (-19300.314 kcal/mol, delta= 0.000) - model DOS gas Enthalpy = -30.757005 (-19300.312 kcal/mol, delta= 0.002) - original gas Entropy = 0.000114 ( 71.629 cal/mol-k,delta= 0.000) - unajusted DOS gas Entropy = 0.000114 ( 71.743 cal/mol-k,delta= 0.114) - model DOS gas Entropy = 0.000114 ( 71.750 cal/mol-k,delta= 0.121) - original gas Free Energy = -30.791042 (-19321.671 kcal/mol, delta= 0.000) - unadjusted DOS gas Free Energy = -30.791096 (-19321.704 kcal/mol, delta= -0.034) - model DOS gas Free Energy = -30.791096 (-19321.704 kcal/mol, delta= -0.034) - original sol Free Energy = -30.791042 (-19321.671 kcal/mol) - unadjusted DOS sol Free Energy = -30.791096 (-19321.704 kcal/mol) - model DOS sol Free Energy = -30.791096 (-19321.704 kcal/mol) DOS sigma = 50.000000 - vibrational DOS enthalpy correction = 0.015489 kcal/mol ( 9.720 kcal/mol) - model vibrational DOS enthalpy correction = 0.015777 kcal/mol ( 9.900 kcal/mol) - vibrational DOS Entropy = 0.000013 ( 8.383 cal/mol-k) - model vibrational DOS Entropy = 0.000014 ( 8.943 cal/mol-k) - original gas Energy = -30.776469 (-19312.526 kcal/mol) - original gas Enthalpy = -30.757009 (-19300.314 kcal/mol, delta= 0.000) - unajusted DOS gas Enthalpy = -30.757205 (-19300.437 kcal/mol, delta= -0.123) - model DOS gas Enthalpy = -30.756917 (-19300.257 kcal/mol, delta= 0.058) - original gas Entropy = 0.000114 ( 71.629 cal/mol-k,delta= 0.000) - unajusted DOS gas Entropy = 0.000113 ( 70.726 cal/mol-k,delta= -0.903) - model DOS gas Entropy = 0.000114 ( 71.286 cal/mol-k,delta= -0.343) - original gas Free Energy = -30.791042 (-19321.671 kcal/mol, delta= 0.000) - unadjusted DOS gas Free Energy = -30.790809 (-19321.524 kcal/mol, delta= 0.146) - model DOS gas Free Energy = -30.790787 (-19321.511 kcal/mol, delta= 0.160) - original sol Free Energy = -30.791042 (-19321.671 kcal/mol) - unadjusted DOS sol Free Energy = -30.790809 (-19321.524 kcal/mol) - model DOS sol Free Energy = -30.790787 (-19321.511 kcal/mol) DOS sigma = 100.000000 - vibrational DOS enthalpy correction = 0.015398 kcal/mol ( 9.663 kcal/mol) - model vibrational DOS enthalpy correction = 0.015839 kcal/mol ( 9.939 kcal/mol) - vibrational DOS Entropy = 0.000011 ( 7.205 cal/mol-k) - model vibrational DOS Entropy = 0.000013 ( 7.958 cal/mol-k) - original gas Energy = -30.776469 (-19312.526 kcal/mol) - original gas Enthalpy = -30.757009 (-19300.314 kcal/mol, delta= 0.000) - unajusted DOS gas Enthalpy = -30.757296 (-19300.495 kcal/mol, delta= -0.180) - model DOS gas Enthalpy = -30.756855 (-19300.218 kcal/mol, delta= 0.097) - original gas Entropy = 0.000114 ( 71.629 cal/mol-k,delta= 0.000) - unajusted DOS gas Entropy = 0.000111 ( 69.547 cal/mol-k,delta= -2.082) - model DOS gas Entropy = 0.000112 ( 70.301 cal/mol-k,delta= -1.328) - original gas Free Energy = -30.791042 (-19321.671 kcal/mol, delta= 0.000) - unadjusted DOS gas Free Energy = -30.790340 (-19321.230 kcal/mol, delta= 0.441) - model DOS gas Free Energy = -30.790257 (-19321.178 kcal/mol, delta= 0.493) - original sol Free Energy = -30.791042 (-19321.671 kcal/mol) - unadjusted DOS sol Free Energy = -30.790340 (-19321.230 kcal/mol) - model DOS sol Free Energy = -30.790257 (-19321.178 kcal/mol) Normal Mode Frequency (cm-1) IR Intensity (arbitrary) ----------- ---------------- ------------------------ 1 -0.000 0.697 2 -0.000 0.153 3 -0.000 0.065 4 -0.000 0.017 5 -0.000 0.350 6 0.000 0.469 7 33.760 1.471 8 231.950 3.386 9 348.660 0.119 10 499.760 1.198 11 2268.950 103.838 12 2640.860 8.238 No Hindered Rotor Data +-------------------------------------+ | Reactions Contained in the Database | +-------------------------------------+ Reactions Containing INCHIKEY = VHLOXWRZXCHQDD-UHFFFAOYSA-N Reactionid Erxn(gas) Hrxn(gas) Grxn(gas) delta_Solv Grxn(aq) ReactionType Reaction
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KEYWORDs - reaction: :reaction chinese_room: :chinese_room molecule: :molecule nmr: :nmr predict: :predict submitesmiles: :submitesmiles nosubmitmissingesmiles resubmitmissingesmiles submitmachines: :submitmachines useallentries nomodelcorrect eigenvalues: :eigenvalues frequencies: :frequencies nwoutput: :nwoutput xyzfile: :xyzfile alleigs: :alleigs allfreqs: :allfreqs reactionenumerate: energytype:[erxn(gas) hrxn(gas) grxn(gas) delta_solvation grxn(aq)] :energytype energytype:[kcal/mol kj/mol ev cm-1 ry hartree au] :energytype tablereactions: reaction: ... :reaction reaction: ... :reaction ... :tablereactions tablemethods: method: ... :method method: ... :method ... :tablemethods :reactionenumerate rotatebonds xyzinput: label: :label xyzdata: ... xyz data ... :xyzdata :xyzinput submitHf: :submitHf nmrexp: :nmrexp findreplace: old text | new text :findreplace listnwjobs fetchnwjob: :fetchnwjob pushnwjob: :pushnwjob printcsv: :printcsv printeig: :printeig printfreq: :printfreq printxyz: :printxyz printjobinfo: :printjobinfo printnwout: :printnwout badids: :badids hup_string: database: table: request_table: listallesmiles queuecheckThis software service and its documentation were developed at the Environmental Molecular Sciences Laboratory (EMSL) at Pacific Northwest National Laboratory, a multiprogram national laboratory, operated for the U.S. Department of Energy by Battelle under Contract Number DE-AC05-76RL01830. Support for this work was provided by the Department of Energy Office of Biological and Environmental Research, and Department of Defense environmental science and technology program (SERDP). THE SOFTWARE SERVICE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE SERVICE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE SERVICE.