Results from an EMSL Arrows Calculation
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The id(s) for emsiles = OC[C@@H](CCl)O theory{ccsd(t)} xc{unknown} basis{6-311++G(2d,2p)} solvation_type{COSMO} ^{0} theory_base{dft} xc_base{b3lyp} basis_base{6-311++G(2d,2p)} are: 44327 Use id=% instead of esmiles to print other entries. mformula = C3Cl1H7O2 iupac = (2S)-3-chloropropane-1,2-diol PubChem = 148904 PubChem LCSS = 148904 cas = 60827-45-4 synonyms = 60827-45-4; (S)-(+)-3-Chloro-1,2-propanediol; (S)-3-Chloro-1,2-propanediol; (S)-3-chloropropane-1,2-diol; (S)-alpha-Chlorohydrin; (2S)-3-chloropropane-1,2-diol; S-3-Chloro-1,2-propanediol; CCRIS 7386; 1,2-Propanediol, 3-chloro-, (S)-; 1,2-Propanediol, 3-chloro-, (2S)-; AK-98823; MFCD00210270; C3H7ClO2; UNII-227BD3H6H6; PubChem5740; sGPhMQDIK]UQX@; AC1L3Y1N; KSC489M3L; SCHEMBL262825; (S)-(+)-alpha-Chlorohydrin; (S)-|A-Glycerol chlorohydrin; AC1Q77S7; CTK3I9635; (S)-(+)-alpha-Monochlorohydrin; MolPort-003-928-770; SSZWWUDQMAHNAQ-GSVOUGTGSA-N; (S)-3-chloro-propane-1,2-diol; 227BD3H6H6; (2S)-3-Chloro-1,2-propanediol; ACT05633; ZINC2041174; (2S)-3-chloranylpropane-1,2-diol; ANW-33591; CC0012; FCH964052; AKOS005256195; AKOS006377003; AC-7037; AM81448; AN-4975; CC-1255; CS-W011275; LS30054; RTR-020962; S)-( +)-3-Chloro-1,2-propanediol; AJ-33286; CC-01403; CJ-07672; CJ-32529; Glycerol (S)-(+)-alpha-Monochlorohydrin; KB-05373; OR000331; SC-05684; AB0010733; AX8021740; LS-120253; TL8003855; TR-020962; ST24020829; 827C454; A845569; C-00408; UNII-QGS78A3T6P component SSZWWUDQMAHNAQ-GSVOUGTGSA-N; (S)-(+)-3-Chloro-1,2-propanediol, 97%, optical purity ee: 97% (GLC) Search Links to Other Online Resources (may not be available): - Google Structure Search - EPA CompTox Database - Chemical Entities of Biological Interest (ChEBI) - NIH ChemIDplus - A TOXNET DATABASE - The Human Metabolome Database (HMDB) - OECD eChemPortal - Google Scholar +==================================================+ || Molecular Calculation || +==================================================+ Id = 44327 NWOutput = Link to NWChem Output (download) Datafiles: image_resset: api/image_reset/44327 Calculation performed by Eric Bylaska - we20961.emsl.pnl.gov Numbers of cpus used for calculation = 32 Calculation walltime = 9208.300000 seconds (0 days 2 hours 33 minutes 28 seconds) +----------------+ | Energetic Data | +----------------+ Id = 44327 iupac = (2S)-3-chloropropane-1,2-diol mformula = C3Cl1H7O2 inchi = InChI=1S/C3H7ClO2/c4-1-3(6)2-5/h3,5-6H,1-2H2/t3-/m1/s1 inchikey = SSZWWUDQMAHNAQ-GSVOUGTGSA-N esmiles = OC[C@@H](CCl)O theory{ccsd(t)} xc{unknown} basis{6-311++G(2d,2p)} solvation_type{COSMO} ^{0} theory_base{dft} xc_base{b3lyp} basis_base{6-311++G(2d,2p)} calculation_type = ovc theory = ccsd(t) xc = unknown basis = 6-311++G(2d,2p) charge,mult = 0 1 energy = -728.159803 Hartrees enthalpy correct.= 0.113116 Hartrees entropy = 83.251 cal/mol-K solvation energy = -9.825 kcal/mol solvation_type = COSMO Sitkoff cavity dispersion = 2.155 kcal/mol Honig cavity dispersion = 6.476 kcal/mol ASA solvent accesible surface area = 259.028 Angstrom2 ASA solvent accesible volume = 242.552 Angstrom3 +-----------------+ | Structural Data | +-----------------+
JSmol: an open-source HTML5 viewer for chemical structures in 3D
Number of Atoms = 13 Units are Angstrom for bonds and degrees for angles Type I J K L M Value ----------- ----- ----- ----- ----- ----- ---------- 1 Stretch C1 C2 1.52683 2 Stretch C1 O6 1.41797 3 Stretch C1 H7 1.09061 4 Stretch C1 H8 1.09487 5 Stretch C2 C3 1.51897 6 Stretch C2 O5 1.42605 7 Stretch C2 H9 1.09347 8 Stretch C3 Cl4 1.82687 9 Stretch C3 H10 1.08606 10 Stretch C3 H11 1.08478 11 Stretch O5 H12 0.96529 12 Stretch O6 H13 0.96392 13 Bend C2 C1 O6 110.86757 14 Bend C2 C1 H7 110.15819 15 Bend C2 C1 H8 109.97536 16 Bend O6 C1 H7 106.65815 17 Bend O6 C1 H8 111.06834 18 Bend H7 C1 H8 108.02163 19 Bend C1 C2 C3 114.53751 20 Bend C1 C2 O5 110.32801 21 Bend C1 C2 H9 107.83912 22 Bend C3 C2 O5 112.12513 23 Bend C3 C2 H9 106.43636 24 Bend O5 C2 H9 104.94816 25 Bend C2 C3 Cl4 112.08509 26 Bend C2 C3 H10 111.72179 27 Bend C2 C3 H11 110.89559 28 Bend Cl4 C3 H10 106.34839 29 Bend Cl4 C3 H11 105.44225 30 Bend H10 C3 H11 110.07468 31 Bend C2 O5 H12 108.05102 32 Bend C1 O6 H13 107.18879 33 Dihedral C1 C2 C3 Cl4 66.71169 34 Dihedral C1 C2 C3 H10 -52.53904 35 Dihedral C1 C2 C3 H11 -175.74062 36 Dihedral C1 C2 O5 H12 -78.37550 37 Dihedral C2 C1 O6 H13 48.63455 38 Dihedral C3 C2 C1 O6 175.37372 39 Dihedral C3 C2 C1 H7 57.55043 40 Dihedral C3 C2 C1 H8 -61.40271 41 Dihedral C3 C2 O5 H12 50.57844 42 Dihedral Cl4 C3 C2 O5 -60.00391 43 Dihedral Cl4 C3 C2 H9 -174.22463 44 Dihedral O5 C2 C1 O6 -56.99021 45 Dihedral O5 C2 C1 H7 -174.81351 46 Dihedral O5 C2 C1 H8 66.23336 47 Dihedral O5 C2 C3 H10 -179.25464 48 Dihedral O5 C2 C3 H11 57.54378 49 Dihedral O6 C1 C2 H9 57.10120 50 Dihedral H7 C1 C2 H9 -60.72209 51 Dihedral H7 C1 O6 H13 168.57020 52 Dihedral H8 C1 C2 H9 -179.67523 53 Dihedral H8 C1 O6 H13 -73.95678 54 Dihedral H9 C2 C3 H10 66.52463 55 Dihedral H9 C2 C3 H11 -56.67695 56 Dihedral H9 C2 O5 H12 165.70922
+-----------------+ | Eigenvalue Data | +-----------------+ Id = 44327 iupac = (2S)-3-chloropropane-1,2-diol mformula = C3Cl1H7O2 InChI = InChI=1S/C3H7ClO2/c4-1-3(6)2-5/h3,5-6H,1-2H2/t3-/m1/s1 smiles = OC[C@@H](CCl)O esmiles = OC[C@@H](CCl)O theory{ccsd(t)} xc{unknown} basis{6-311++G(2d,2p)} solvation_type{COSMO} ^{0} theory_base{dft} xc_base{b3lyp} basis_base{6-311++G(2d,2p)} theory = ccsd(t) xc = unknown basis = 6-311++G(2d,2p) charge = 0 mult = 1 solvation_type = COSMO twirl webpage = TwirlMol Link image webpage = GIF Image Link Eigevalue Spectra ---------- 14.40 eV --- -- --- ---------- -- -- -- - -- -- -- - -- -- -- - --- -- --- ---------- 6 - - - - 7 - - - - ---- ---- -- -- -- - --- -- --- ---------- LUMO= 1.03 eV HOMO= -11.76 eV +++ ++ +++ ++++++++++ ++++ ++++ ++++++++++ ++++ ++++ ++++++++++ ++++ ++++ ++++++++++ ++++++++++ ++++++++++ ++++++++++ ++++++++++ ++++++++++ -37.90 eV ++++++++++
spin eig occ ---------------------------- restricted -37.90 2.00 restricted -36.97 2.00 restricted -31.20 2.00 restricted -28.12 2.00 restricted -25.29 2.00 restricted -22.73 2.00 restricted -19.63 2.00 restricted -18.68 2.00 restricted -18.45 2.00 restricted -17.15 2.00 restricted -16.97 2.00 restricted -16.07 2.00 restricted -15.08 2.00 restricted -14.34 2.00 restricted -13.96 2.00 restricted -13.16 2.00 restricted -12.69 2.00 restricted -12.36 2.00 restricted -11.76 2.00 restricted 1.03 0.00 restricted 1.41 0.00 restricted 1.55 0.00 restricted 1.72 0.00 restricted 2.18 0.00 restricted 2.30 0.00 restricted 2.42 0.00 restricted 2.82 0.00 restricted 3.40 0.00 restricted 3.96 0.00 restricted 4.32 0.00 restricted 4.35 0.00 restricted 4.45 0.00 restricted 4.55 0.00 restricted 4.62 0.00 restricted 4.81 0.00 restricted 5.09 0.00 restricted 5.36 0.00 restricted 5.46 0.00 restricted 5.50 0.00 restricted 5.91 0.00 restricted 6.15 0.00 restricted 6.29 0.00 restricted 6.76 0.00 restricted 7.69 0.00 restricted 7.91 0.00 restricted 8.20 0.00 restricted 8.62 0.00 restricted 9.11 0.00 restricted 9.35 0.00 restricted 9.40 0.00 restricted 10.00 0.00 restricted 10.16 0.00 restricted 10.31 0.00 restricted 10.36 0.00 restricted 10.83 0.00 restricted 11.16 0.00 restricted 11.34 0.00 restricted 11.73 0.00 restricted 12.39 0.00 restricted 12.86 0.00 restricted 13.09 0.00 restricted 13.53 0.00 restricted 14.40 0.00
+----------------------------------------+ | Vibrational Density of States Analysis | +----------------------------------------+ Total number of frequencies = 39 Total number of negative frequencies = 0 Number of lowest frequencies = 8 (frequency threshold = 500 ) Exact dos norm = 33.000 Generating vibrational DOS Generating model vibrational DOS to have a proper norm 10.00 32.99 8.00 33.00 50.00 32.97 7.97 33.00 100.00 32.70 7.70 33.00 Generating IR Spectra Writing vibrational density of states (DOS) to vdos.dat Writing model vibrational density of states (DOS_FIXED) to vdos-model.dat Writing IR spectra to irdos.dat Temperature= 298.15 zero-point correction to energy = 65.954 kcal/mol ( 0.105105) vibrational contribution to enthalpy correction = 68.612 kcal/mol ( 0.109341) vibrational contribution to Entropy = 15.533 cal/mol-k hindered rotor enthalpy correction = 0.000 kcal/mol ( 0.000000) hindered rotor entropy correction = 0.000 cal/mol-k
DOS sigma = 10.000000 - vibrational DOS enthalpy correction = 0.109342 kcal/mol ( 68.613 kcal/mol) - model vibrational DOS enthalpy correction = 0.109349 kcal/mol ( 68.617 kcal/mol) - vibrational DOS Entropy = 0.000025 ( 15.558 cal/mol-k) - model vibrational DOS Entropy = 0.000025 ( 15.568 cal/mol-k) - original gas Energy = -728.159803 (-456927.171 kcal/mol) - original gas Enthalpy = -728.046687 (-456856.190 kcal/mol, delta= 0.000) - unajusted DOS gas Enthalpy = -728.046685 (-456856.189 kcal/mol, delta= 0.001) - model DOS gas Enthalpy = -728.046679 (-456856.185 kcal/mol, delta= 0.005) - original gas Entropy = 0.000133 ( 83.251 cal/mol-k,delta= 0.000) - unajusted DOS gas Entropy = 0.000133 ( 83.276 cal/mol-k,delta= 0.025) - model DOS gas Entropy = 0.000133 ( 83.286 cal/mol-k,delta= 0.035) - original gas Free Energy = -728.086242 (-456881.011 kcal/mol, delta= 0.000) - unadjusted DOS gas Free Energy = -728.086252 (-456881.017 kcal/mol, delta= -0.007) - model DOS gas Free Energy = -728.086251 (-456881.016 kcal/mol, delta= -0.005) - original sol Free Energy = -728.101899 (-456890.836 kcal/mol) - unadjusted DOS sol Free Energy = -728.101909 (-456890.842 kcal/mol) - model DOS sol Free Energy = -728.101907 (-456890.841 kcal/mol) DOS sigma = 50.000000 - vibrational DOS enthalpy correction = 0.109359 kcal/mol ( 68.624 kcal/mol) - model vibrational DOS enthalpy correction = 0.109391 kcal/mol ( 68.644 kcal/mol) - vibrational DOS Entropy = 0.000026 ( 16.253 cal/mol-k) - model vibrational DOS Entropy = 0.000026 ( 16.304 cal/mol-k) - original gas Energy = -728.159803 (-456927.171 kcal/mol) - original gas Enthalpy = -728.046687 (-456856.190 kcal/mol, delta= 0.000) - unajusted DOS gas Enthalpy = -728.046668 (-456856.178 kcal/mol, delta= 0.012) - model DOS gas Enthalpy = -728.046637 (-456856.158 kcal/mol, delta= 0.031) - original gas Entropy = 0.000133 ( 83.251 cal/mol-k,delta= 0.000) - unajusted DOS gas Entropy = 0.000134 ( 83.971 cal/mol-k,delta= 0.720) - model DOS gas Entropy = 0.000134 ( 84.022 cal/mol-k,delta= 0.771) - original gas Free Energy = -728.086242 (-456881.011 kcal/mol, delta= 0.000) - unadjusted DOS gas Free Energy = -728.086566 (-456881.214 kcal/mol, delta= -0.203) - model DOS gas Free Energy = -728.086558 (-456881.210 kcal/mol, delta= -0.199) - original sol Free Energy = -728.101899 (-456890.836 kcal/mol) - unadjusted DOS sol Free Energy = -728.102223 (-456891.039 kcal/mol) - model DOS sol Free Energy = -728.102215 (-456891.034 kcal/mol) DOS sigma = 100.000000 - vibrational DOS enthalpy correction = 0.109233 kcal/mol ( 68.545 kcal/mol) - model vibrational DOS enthalpy correction = 0.109579 kcal/mol ( 68.762 kcal/mol) - vibrational DOS Entropy = 0.000026 ( 16.253 cal/mol-k) - model vibrational DOS Entropy = 0.000027 ( 16.817 cal/mol-k) - original gas Energy = -728.159803 (-456927.171 kcal/mol) - original gas Enthalpy = -728.046687 (-456856.190 kcal/mol, delta= 0.000) - unajusted DOS gas Enthalpy = -728.046794 (-456856.257 kcal/mol, delta= -0.068) - model DOS gas Enthalpy = -728.046448 (-456856.040 kcal/mol, delta= 0.150) - original gas Entropy = 0.000133 ( 83.251 cal/mol-k,delta= 0.000) - unajusted DOS gas Entropy = 0.000134 ( 83.971 cal/mol-k,delta= 0.720) - model DOS gas Entropy = 0.000135 ( 84.536 cal/mol-k,delta= 1.285) - original gas Free Energy = -728.086242 (-456881.011 kcal/mol, delta= 0.000) - unadjusted DOS gas Free Energy = -728.086692 (-456881.293 kcal/mol, delta= -0.282) - model DOS gas Free Energy = -728.086614 (-456881.244 kcal/mol, delta= -0.233) - original sol Free Energy = -728.101899 (-456890.836 kcal/mol) - unadjusted DOS sol Free Energy = -728.102349 (-456891.118 kcal/mol) - model DOS sol Free Energy = -728.102270 (-456891.069 kcal/mol) Normal Mode Frequency (cm-1) IR Intensity (arbitrary) ----------- ---------------- ------------------------ 1 -0.000 0.029 2 0.000 0.017 3 0.000 0.075 4 0.000 0.234 5 0.000 0.100 6 0.000 0.117 7 105.300 4.648 8 116.350 3.183 9 193.710 0.789 10 262.420 2.032 11 353.750 1.026 12 398.320 14.685 13 459.160 31.311 14 491.650 49.005 15 600.710 15.115 16 689.640 5.892 17 851.790 13.479 18 888.440 3.057 19 972.820 2.530 20 1066.580 37.255 21 1082.330 23.650 22 1099.510 19.329 23 1198.650 21.760 24 1225.500 4.426 25 1269.330 2.245 26 1314.660 8.546 27 1331.730 5.317 28 1388.560 7.733 29 1417.850 25.771 30 1436.890 6.353 31 1479.980 8.296 32 1511.660 0.763 33 3009.330 12.864 34 3040.480 4.253 35 3076.200 10.278 36 3109.060 5.392 37 3153.450 1.683 38 3767.380 18.145 39 3794.540 18.618 No Hindered Rotor Data +-------------------------------------+ | Reactions Contained in the Database | +-------------------------------------+ Reactions Containing INCHIKEY = SSZWWUDQMAHNAQ-GSVOUGTGSA-N Reactionid Erxn(gas) Hrxn(gas) Grxn(gas) delta_Solv Grxn(aq) ReactionType Reaction
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KEYWORDs - reaction: :reaction chinese_room: :chinese_room molecule: :molecule nmr: :nmr predict: :predict submitesmiles: :submitesmiles nosubmitmissingesmiles resubmitmissingesmiles submitmachines: :submitmachines useallentries nomodelcorrect eigenvalues: :eigenvalues frequencies: :frequencies nwoutput: :nwoutput xyzfile: :xyzfile alleigs: :alleigs allfreqs: :allfreqs reactionenumerate: energytype:[erxn(gas) hrxn(gas) grxn(gas) delta_solvation grxn(aq)] :energytype energytype:[kcal/mol kj/mol ev cm-1 ry hartree au] :energytype tablereactions: reaction: ... :reaction reaction: ... :reaction ... :tablereactions tablemethods: method: ... :method method: ... :method ... :tablemethods :reactionenumerate rotatebonds xyzinput: label: :label xyzdata: ... xyz data ... :xyzdata :xyzinput submitHf: :submitHf nmrexp: :nmrexp findreplace: old text | new text :findreplace listnwjobs fetchnwjob: :fetchnwjob pushnwjob: :pushnwjob printcsv: :printcsv printeig: :printeig printfreq: :printfreq printxyz: :printxyz printjobinfo: :printjobinfo printnwout: :printnwout badids: :badids hup_string: database: table: request_table: listallesmiles queuecheckThis software service and its documentation were developed at the Environmental Molecular Sciences Laboratory (EMSL) at Pacific Northwest National Laboratory, a multiprogram national laboratory, operated for the U.S. Department of Energy by Battelle under Contract Number DE-AC05-76RL01830. Support for this work was provided by the Department of Energy Office of Biological and Environmental Research, and Department of Defense environmental science and technology program (SERDP). THE SOFTWARE SERVICE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE SERVICE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE SERVICE.