Results from an EMSL Arrows Calculation
EMSL Arrows is a revolutionary approach to materials and chemical simulations that uses NWChem and chemical computational databases to make materials and chemical modeling accessible via a broad spectrum of digital communications including posts to web APIs, social networks, and traditional email. |
Molecular modeling software has previously been extremely complex, making it prohibative to all but experts in the field, yet even experts can struggle to perform calculations. This service is designed to be used by experts and non-experts alike. Experts can carry out and keep track of large numbers of complex calculations with diverse levels of theories present in their workflows. Additionally, due to a streamlined and easy-to-use input, non-experts can carry out a wide variety of molecular modeling calculations previously not accessible to them.
The id(s) for emsiles = Oc1n[nH]c(=O)[nH]1 theory{dft} xc{pbe0} basis{6-311++G(2d,2p)} solvation_type{COSMO} ^{0} are: 76332 Use id=% instead of esmiles to print other entries. mformula = C2H3N3O2 iupac = 1,2,4-triazolidine-3,5-dione PubChem = 72916 PubChem LCSS = 72916 cas = 3232-84-6 kegg = D92762 synonyms = Urazole; 1,2,4-Triazolidine-3,5-dione; 3232-84-6; Urazol; Urazole bicarbamide; Bicarbamimide; s-Triazole-2,5-diol; s-Triazole-3,5-diol; 3,5-Dihydroxy-1,2,4-triazole; UNII-U4VGB8C36D; NSC 1892; NSC 15394; U4VGB8C36D; 1H-1,2,4-Triazole-3,5(2H,4H)-dione; NSC1892; 1,4-Triazolidine-3,5-dione; 1H-1,4-Triazole-3,5(2H,4H)-dione; 1,2,4-Triazole-3,5-diol; EINECS 221-776-9; Bicarbamimide (VAN); Urazole, 97%; AI3-61104; SCHEMBL130780; CHEMBL1996517; DTXSID5062920; Tetrahydro-1,2,4-triazole-dione; 4h-1,2,4-triazole-3,5-diol; NSC-1892; NSC15394; ZINC6090867; MFCD00005225; NSC-15394; AKOS015913604; AS-59390; NCI60_001576; CS-0120009; U0045; D92762; 5-hydroxy-1,2-dihydro-3h-1,2,4-triazol-3-one; 5-hydroxy-2,4-dihydro-3h-1,2,4-triazol-3-one; J-640166; J-800168; Q27290691 Search Links to Other Online Resources (may not be available): - Google Structure Search - EPA CompTox Database - Chemical Entities of Biological Interest (ChEBI) - NIH ChemIDplus - A TOXNET DATABASE - The Human Metabolome Database (HMDB) - OECD eChemPortal - Google Scholar +==================================================+ || Molecular Calculation || +==================================================+ Id = 76332 NWOutput = Link to NWChem Output (download) Datafiles: lumo-restricted.cube-36601-2022-10-24-15:37:2 (download) homo-restricted.cube-36601-2022-10-24-15:37:2 (download) cosmo.xyz-36601-2022-10-24-15:37:2 (download) mo_orbital_nwchemarrows-2025-4-21-18-50-188484.out-906522-2025-4-23-18:37:9 (download) image_resset: api/image_reset/76332 Calculation performed by Eric Bylaska - arrow6.emsl.pnl.gov Numbers of cpus used for calculation = 32 Calculation walltime = 6575.100000 seconds (0 days 1 hours 49 minutes 35 seconds) +----------------+ | Energetic Data | +----------------+ Id = 76332 iupac = 1,2,4-triazolidine-3,5-dione mformula = C2H3N3O2 inchi = InChI=1S/C2H3N3O2/c6-1-3-2(7)5-4-1/h(H3,3,4,5,6,7) inchikey = UDATXMIGEVPXTR-UHFFFAOYSA-N esmiles = Oc1n[nH]c(=O)[nH]1 theory{dft} xc{pbe0} basis{6-311++G(2d,2p)} solvation_type{COSMO} ^{0} calculation_type = ovc theory = dft xc = pbe0 basis = 6-311++G(2d,2p) charge,mult = 0 1 energy = -392.432252 Hartrees enthalpy correct.= 0.076136 Hartrees entropy = 76.762 cal/mol-K solvation energy = -14.582 kcal/mol solvation_type = COSMO Sitkoff cavity dispersion = 2.038 kcal/mol Honig cavity dispersion = 5.892 kcal/mol ASA solvent accesible surface area = 235.697 Angstrom2 ASA solvent accesible volume = 222.278 Angstrom3 +-----------------+ | Structural Data | +-----------------+
JSmol: an open-source HTML5 viewer for chemical structures in 3D
Number of Atoms = 10 Units are Angstrom for bonds and degrees for angles Type I J K L M Value ----------- ----- ----- ----- ----- ----- ---------- 1 Stretch C1 O2 1.32972 2 Stretch C1 N3 1.35728 3 Stretch C1 N7 1.28587 4 Stretch O2 H8 0.96280 5 Stretch N3 C4 1.40103 6 Stretch N3 H9 1.00304 7 Stretch C4 O5 1.20870 8 Stretch C4 N6 1.36419 9 Stretch N6 N7 1.38138 10 Stretch N6 H10 1.00140 11 Bend O2 C1 N3 120.19542 12 Bend O2 C1 N7 126.47597 13 Bend N3 C1 N7 113.32853 14 Bend C1 O2 H8 107.58155 15 Bend C1 N3 C4 107.98015 16 Bend C1 N3 H9 127.50073 17 Bend C4 N3 H9 124.51665 18 Bend N3 C4 O5 128.12914 19 Bend N3 C4 N6 101.41464 20 Bend O5 C4 N6 130.45602 21 Bend C4 N6 N7 114.10359 22 Bend C4 N6 H10 125.36167 23 Bend N7 N6 H10 120.38026 24 Bend C1 N7 N6 103.16161 25 Dihedral C1 N3 C4 O5 179.32299 26 Dihedral C1 N3 C4 N6 -0.82631 27 Dihedral C1 N7 N6 C4 -0.96217 28 Dihedral C1 N7 N6 H10 -176.68158 29 Dihedral O2 C1 N3 C4 -179.78629 30 Dihedral O2 C1 N3 H9 -0.34229 31 Dihedral O2 C1 N7 N6 -179.53576 32 Dihedral N3 C1 O2 H8 179.49853 33 Dihedral N3 C1 N7 N6 0.36264 34 Dihedral N3 C4 N6 N7 1.11368 35 Dihedral N3 C4 N6 H10 176.58498 36 Dihedral C4 N3 C1 N7 0.30822 37 Dihedral O5 C4 N3 H9 -0.14167 38 Dihedral O5 C4 N6 N7 -179.04067 39 Dihedral O5 C4 N6 H10 -3.56937 40 Dihedral N6 C4 N3 H9 179.70903 41 Dihedral N7 C1 O2 H8 -0.60940 42 Dihedral N7 C1 N3 H9 179.75222
+-----------------+ | Eigenvalue Data | +-----------------+ Id = 76332 iupac = 1,2,4-triazolidine-3,5-dione mformula = C2H3N3O2 InChI = InChI=1S/C2H3N3O2/c6-1-3-2(7)5-4-1/h(H3,3,4,5,6,7) smiles = Oc1n[nH]c(=O)[nH]1 esmiles = Oc1n[nH]c(=O)[nH]1 theory{dft} xc{pbe0} basis{6-311++G(2d,2p)} solvation_type{COSMO} ^{0} theory = dft xc = pbe0 basis = 6-311++G(2d,2p) charge = 0 mult = 1 solvation_type = COSMO twirl webpage = TwirlMol Link image webpage = GIF Image Link Eigevalue Spectra ---- ---- 65.45 eV ---------- --- -- --- ---- ---- ---- ---- --- -- --- ---- ---- ---- ---- ---- ---- ---- ---- - - - - -- ---- ---- -- -- -- - --- -- --- ---- ---- -- -- -- - -- -- -- - -- -- -- - --- -- --- --- -- --- - - - - -- - - - - -- -- -- -- - 6 - - - - --- -- --- ---------- - - - - -- 7 - - - - 9 - - - - 8 - - - - 7 - - - - -- -- -- - LUMO= 0.05 eV HOMO= -6.75 eV ++++++++++ ++++++++++ +++ ++ +++ ++++ ++++ +++ ++ +++ ++++ ++++ ++++++++++ ++++++++++ ++++++++++ ++++++++++ ++++ ++++ -31.64 eV ++++++++++
spin eig occ ---------------------------- restricted -31.64 2.00 restricted -30.51 2.00 restricted -29.13 2.00 restricted -26.30 2.00 restricted -23.49 2.00 restricted -19.20 2.00 restricted -18.69 2.00 restricted -16.34 2.00 restricted -15.57 2.00 restricted -14.62 2.00 restricted -14.38 2.00 restricted -13.23 2.00 restricted -12.15 2.00 restricted -12.12 2.00 restricted -10.28 2.00 restricted -10.02 2.00 restricted -9.23 2.00 restricted -8.55 2.00 restricted -6.75 2.00 restricted 0.05 0.00 restricted 0.51 0.00 restricted 0.79 0.00 restricted 0.92 0.00 restricted 1.19 0.00 restricted 1.48 0.00 restricted 1.51 0.00 restricted 1.71 0.00 restricted 1.95 0.00 restricted 2.59 0.00 restricted 2.79 0.00 restricted 3.15 0.00 restricted 3.44 0.00 restricted 3.71 0.00 restricted 3.78 0.00 restricted 3.94 0.00 restricted 4.09 0.00 restricted 4.67 0.00 restricted 4.98 0.00 restricted 5.29 0.00 restricted 5.39 0.00 restricted 5.54 0.00 restricted 5.78 0.00 restricted 6.11 0.00 restricted 6.41 0.00 restricted 6.64 0.00 restricted 6.74 0.00 restricted 6.97 0.00 restricted 7.63 0.00 restricted 7.80 0.00 restricted 7.88 0.00 restricted 8.06 0.00 restricted 8.25 0.00 restricted 8.50 0.00 restricted 8.75 0.00 restricted 9.02 0.00 restricted 9.63 0.00 restricted 10.05 0.00 restricted 10.38 0.00 restricted 10.68 0.00 restricted 12.50 0.00 restricted 12.95 0.00 restricted 13.58 0.00 restricted 14.03 0.00 restricted 15.15 0.00 restricted 15.71 0.00 restricted 15.80 0.00 restricted 16.31 0.00 restricted 16.52 0.00 restricted 16.69 0.00 restricted 17.57 0.00 restricted 17.79 0.00 restricted 18.28 0.00 restricted 18.87 0.00 restricted 19.15 0.00 restricted 19.58 0.00 restricted 19.84 0.00 restricted 20.27 0.00 restricted 20.76 0.00 restricted 21.95 0.00 restricted 22.01 0.00 restricted 22.40 0.00 restricted 22.58 0.00 restricted 22.75 0.00 restricted 23.14 0.00 restricted 23.23 0.00 restricted 24.71 0.00 restricted 25.17 0.00 restricted 25.42 0.00 restricted 26.00 0.00 restricted 26.98 0.00 restricted 27.15 0.00 restricted 27.93 0.00 restricted 28.37 0.00 restricted 28.84 0.00 restricted 29.30 0.00 restricted 29.67 0.00 restricted 30.57 0.00 restricted 30.78 0.00 restricted 31.60 0.00 restricted 32.03 0.00 restricted 32.32 0.00 restricted 32.85 0.00 restricted 33.27 0.00 restricted 34.97 0.00 restricted 35.77 0.00 restricted 36.44 0.00 restricted 37.02 0.00 restricted 38.13 0.00 restricted 38.41 0.00 restricted 38.67 0.00 restricted 39.25 0.00 restricted 40.27 0.00 restricted 41.20 0.00 restricted 41.66 0.00 restricted 41.79 0.00 restricted 42.11 0.00 restricted 42.51 0.00 restricted 43.10 0.00 restricted 44.34 0.00 restricted 45.81 0.00 restricted 46.28 0.00 restricted 49.00 0.00 restricted 49.32 0.00 restricted 50.75 0.00 restricted 52.42 0.00 restricted 52.98 0.00 restricted 54.22 0.00 restricted 54.32 0.00 restricted 55.12 0.00 restricted 55.59 0.00 restricted 57.18 0.00 restricted 58.14 0.00 restricted 58.71 0.00 restricted 59.27 0.00 restricted 59.98 0.00 restricted 61.03 0.00 restricted 64.57 0.00 restricted 65.45 0.00
+----------------------------------------+ | Vibrational Density of States Analysis | +----------------------------------------+ Total number of frequencies = 30 Total number of negative frequencies = 0 Number of lowest frequencies = 6 (frequency threshold = 500 ) Exact dos norm = 24.000 Generating vibrational DOS Generating model vibrational DOS to have a proper norm 10.00 24.00 6.00 24.00 50.00 24.00 6.00 24.00 100.00 23.90 5.90 24.00 Generating IR Spectra Writing vibrational density of states (DOS) to vdos.dat Writing model vibrational density of states (DOS_FIXED) to vdos-model.dat Writing IR spectra to irdos.dat Temperature= 298.15 zero-point correction to energy = 43.474 kcal/mol ( 0.069281) vibrational contribution to enthalpy correction = 45.407 kcal/mol ( 0.072361) vibrational contribution to Entropy = 10.280 cal/mol-k hindered rotor enthalpy correction = 0.000 kcal/mol ( 0.000000) hindered rotor entropy correction = 0.000 cal/mol-k
DOS sigma = 10.000000 - vibrational DOS enthalpy correction = 0.072362 kcal/mol ( 45.408 kcal/mol) - model vibrational DOS enthalpy correction = 0.072361 kcal/mol ( 45.407 kcal/mol) - vibrational DOS Entropy = 0.000016 ( 10.292 cal/mol-k) - model vibrational DOS Entropy = 0.000016 ( 10.290 cal/mol-k) - original gas Energy = -392.432252 (-246254.954 kcal/mol) - original gas Enthalpy = -392.356116 (-246207.178 kcal/mol, delta= 0.000) - unajusted DOS gas Enthalpy = -392.356115 (-246207.177 kcal/mol, delta= 0.001) - model DOS gas Enthalpy = -392.356117 (-246207.178 kcal/mol, delta= -0.000) - original gas Entropy = 0.000122 ( 76.762 cal/mol-k,delta= 0.000) - unajusted DOS gas Entropy = 0.000122 ( 76.774 cal/mol-k,delta= 0.012) - model DOS gas Entropy = 0.000122 ( 76.772 cal/mol-k,delta= 0.010) - original gas Free Energy = -392.392589 (-246230.065 kcal/mol, delta= 0.000) - unadjusted DOS gas Free Energy = -392.392593 (-246230.068 kcal/mol, delta= -0.003) - model DOS gas Free Energy = -392.392593 (-246230.068 kcal/mol, delta= -0.003) - original sol Free Energy = -392.415826 (-246244.646 kcal/mol) - unadjusted DOS sol Free Energy = -392.415830 (-246244.649 kcal/mol) - model DOS sol Free Energy = -392.415831 (-246244.649 kcal/mol) DOS sigma = 50.000000 - vibrational DOS enthalpy correction = 0.072390 kcal/mol ( 45.425 kcal/mol) - model vibrational DOS enthalpy correction = 0.072395 kcal/mol ( 45.428 kcal/mol) - vibrational DOS Entropy = 0.000017 ( 10.618 cal/mol-k) - model vibrational DOS Entropy = 0.000017 ( 10.624 cal/mol-k) - original gas Energy = -392.432252 (-246254.954 kcal/mol) - original gas Enthalpy = -392.356116 (-246207.178 kcal/mol, delta= 0.000) - unajusted DOS gas Enthalpy = -392.356087 (-246207.160 kcal/mol, delta= 0.018) - model DOS gas Enthalpy = -392.356083 (-246207.157 kcal/mol, delta= 0.021) - original gas Entropy = 0.000122 ( 76.762 cal/mol-k,delta= 0.000) - unajusted DOS gas Entropy = 0.000123 ( 77.100 cal/mol-k,delta= 0.338) - model DOS gas Entropy = 0.000123 ( 77.105 cal/mol-k,delta= 0.343) - original gas Free Energy = -392.392589 (-246230.065 kcal/mol, delta= 0.000) - unadjusted DOS gas Free Energy = -392.392720 (-246230.147 kcal/mol, delta= -0.082) - model DOS gas Free Energy = -392.392718 (-246230.146 kcal/mol, delta= -0.081) - original sol Free Energy = -392.415826 (-246244.646 kcal/mol) - unadjusted DOS sol Free Energy = -392.415957 (-246244.729 kcal/mol) - model DOS sol Free Energy = -392.415955 (-246244.728 kcal/mol) DOS sigma = 100.000000 - vibrational DOS enthalpy correction = 0.072403 kcal/mol ( 45.434 kcal/mol) - model vibrational DOS enthalpy correction = 0.072519 kcal/mol ( 45.506 kcal/mol) - vibrational DOS Entropy = 0.000018 ( 11.073 cal/mol-k) - model vibrational DOS Entropy = 0.000018 ( 11.220 cal/mol-k) - original gas Energy = -392.432252 (-246254.954 kcal/mol) - original gas Enthalpy = -392.356116 (-246207.178 kcal/mol, delta= 0.000) - unajusted DOS gas Enthalpy = -392.356074 (-246207.152 kcal/mol, delta= 0.027) - model DOS gas Enthalpy = -392.355959 (-246207.079 kcal/mol, delta= 0.099) - original gas Entropy = 0.000122 ( 76.762 cal/mol-k,delta= 0.000) - unajusted DOS gas Entropy = 0.000124 ( 77.554 cal/mol-k,delta= 0.792) - model DOS gas Entropy = 0.000124 ( 77.702 cal/mol-k,delta= 0.940) - original gas Free Energy = -392.392589 (-246230.065 kcal/mol, delta= 0.000) - unadjusted DOS gas Free Energy = -392.392923 (-246230.275 kcal/mol, delta= -0.210) - model DOS gas Free Energy = -392.392877 (-246230.246 kcal/mol, delta= -0.181) - original sol Free Energy = -392.415826 (-246244.646 kcal/mol) - unadjusted DOS sol Free Energy = -392.416160 (-246244.856 kcal/mol) - model DOS sol Free Energy = -392.416114 (-246244.828 kcal/mol) Normal Mode Frequency (cm-1) IR Intensity (arbitrary) ----------- ---------------- ------------------------ 1 -0.000 0.013 2 -0.000 0.062 3 0.000 0.229 4 0.000 0.066 5 0.000 0.212 6 0.000 0.039 7 133.420 3.446 8 252.050 0.868 9 371.560 0.910 10 401.070 15.400 11 416.510 15.865 12 467.470 12.354 13 546.140 5.515 14 669.470 0.779 15 699.370 0.061 16 764.610 0.795 17 797.640 1.388 18 1010.780 3.429 19 1058.620 4.726 20 1130.130 5.463 21 1231.760 12.197 22 1286.380 1.520 23 1318.090 5.631 24 1411.260 1.346 25 1600.050 19.502 26 1720.490 48.737 27 1857.090 92.862 28 3710.880 14.623 29 3731.760 21.858 30 3838.630 10.106 No Hindered Rotor Data +-------------------------------------+ | Reactions Contained in the Database | +-------------------------------------+ Reactions Containing INCHIKEY = UDATXMIGEVPXTR-UHFFFAOYSA-N Reactionid Erxn(gas) Hrxn(gas) Grxn(gas) delta_Solv Grxn(aq) ReactionType Reaction 14636 -53.894 -53.633 -56.633 0.000 -56.633 AB + C --> AC + B "O=c1nc(N(=O)=O)[nH][nH]1 theory{pspw4} xc{pbe0} + [OH-] theory{pspw4} xc{pbe0} --> O=c1nc(O)[nH][nH]1 theory{pspw4} xc{pbe0} + O=N[O-] theory{pspw4} xc{pbe0}" 14635 -47.215 -46.841 -49.452 0.000 -49.452 AB + C --> AC + B "O=c1nc(N(=O)=O)[nH][nH]1 theory{pspw4} + [OH-] theory{pspw4} --> O=c1nc(O)[nH][nH]1 theory{pspw4} + O=N[O-] theory{pspw4}" 14634 -61.391 -60.983 -63.716 26.525 -37.192 AB + C --> AC + B "O=c1nc(N(=O)=O)[nH][nH]1 xc{pbe0} + [OH-] xc{pbe0} --> O=c1nc(O)[nH][nH]1 xc{pbe0} + O=N[O-] xc{pbe0}" 14633 -83.281 -83.030 -86.295 27.843 -58.452 AB + C --> AC + B "O=c1nc(N(=O)=O)[nH][nH]1 xc{m06-2x} + [OH-] xc{m06-2x} --> O=c1nc(O)[nH][nH]1 xc{m06-2x} + O=N[O-] xc{m06-2x}" 14623 -50.945 -50.818 -53.858 23.536 -30.322 AB + C --> AC + B "O=c1nc(N(=O)=O)[nH][nH]1 xc{pbe} + [OH-] xc{pbe} --> O=c1nc(O)[nH][nH]1 xc{pbe} + O=N[O-] xc{pbe}" 51 -56.165 -55.985 -59.134 23.113 -36.021 AB + C --> AC + B "O=c1[nH]nc(N(=O)=O)[nH]1 + [OH-] --> O=c1[nH]nc(O)[nH]1 + O=N[O-]"
All requests to Arrows were successful.
KEYWORDs - reaction: :reaction chinese_room: :chinese_room molecule: :molecule nmr: :nmr predict: :predict submitesmiles: :submitesmiles nosubmitmissingesmiles resubmitmissingesmiles submitmachines: :submitmachines useallentries nomodelcorrect eigenvalues: :eigenvalues frequencies: :frequencies nwoutput: :nwoutput xyzfile: :xyzfile alleigs: :alleigs allfreqs: :allfreqs reactionenumerate: energytype:[erxn(gas) hrxn(gas) grxn(gas) delta_solvation grxn(aq)] :energytype energytype:[kcal/mol kj/mol ev cm-1 ry hartree au] :energytype tablereactions: reaction: ... :reaction reaction: ... :reaction ... :tablereactions tablemethods: method: ... :method method: ... :method ... :tablemethods :reactionenumerate rotatebonds xyzinput: label: :label xyzdata: ... xyz data ... :xyzdata :xyzinput submitHf: :submitHf nmrexp: :nmrexp findreplace: old text | new text :findreplace listnwjobs fetchnwjob: :fetchnwjob pushnwjob: :pushnwjob printcsv: :printcsv printeig: :printeig printfreq: :printfreq printxyz: :printxyz printjobinfo: :printjobinfo printnwout: :printnwout badids: :badids hup_string: database: table: request_table: listallesmiles queuecheckThis software service and its documentation were developed at the Environmental Molecular Sciences Laboratory (EMSL) at Pacific Northwest National Laboratory, a multiprogram national laboratory, operated for the U.S. Department of Energy by Battelle under Contract Number DE-AC05-76RL01830. Support for this work was provided by the Department of Energy Office of Biological and Environmental Research, and Department of Defense environmental science and technology program (SERDP). THE SOFTWARE SERVICE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE SERVICE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE SERVICE.