Results from an EMSL Arrows Calculation
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The id(s) for emsiles = C=C/C(=C(\C=C/N(=O)=O)/O)/O theory{dft} xc{b3lyp} basis{6-311++G(2d,2p)} solvation_type{COSMO} ^{0} are: 60057 Use id=% instead of esmiles to print other entries. mformula = C6H7N1O4 iupac = C=C/C(=C(\C=C/N(=O)=O)/O)/O PubChem = PubChem LCSS = Search Links to Other Online Resources (may not be available): - Google Structure Search - EPA CompTox Database - Chemical Entities of Biological Interest (ChEBI) - NIH ChemIDplus - A TOXNET DATABASE - The Human Metabolome Database (HMDB) - OECD eChemPortal - Google Scholar +==================================================+ || Molecular Calculation || +==================================================+ Id = 60057 NWOutput = Link to NWChem Output (download) Datafiles: lumo-restricted.cube-383855-2021-2-16-8:37:35 (download) homo-restricted.cube-383855-2021-2-16-8:37:35 (download) cosmo.xyz-383855-2021-2-16-8:37:35 (download) mo_orbital_nwchemarrows.out-366700-2021-4-13-22:37:3 (download) image_resset: api/image_reset/60057 Calculation performed by Eric Bylaska - arrow6.emsl.pnl.gov Numbers of cpus used for calculation = 32 Calculation walltime = 24123.800000 seconds (0 days 6 hours 42 minutes 3 seconds) +----------------+ | Energetic Data | +----------------+ Id = 60057 iupac = C=C/C(=C(\C=C/N(=O)=O)/O)/O mformula = C6H7N1O4 inchi = InChI=1S/C6H7NO4/c1-2-5(8)6(9)3-4-7(10)11/h2-4,8-9H,1H2/b4-3-,6-5- inchikey = LXDUWERPQQRTGJ-OUPQRBNQSA-N esmiles = C=C/C(=C(\C=C/N(=O)=O)/O)/O theory{dft} xc{b3lyp} basis{6-311++G(2d,2p)} solvation_type{COSMO} ^{0} calculation_type = ovc theory = dft xc = b3lyp basis = 6-311++G(2d,2p) charge,mult = 0 1 energy = -588.527285 Hartrees enthalpy correct.= 0.142655 Hartrees entropy = 104.032 cal/mol-K solvation energy = -20.458 kcal/mol solvation_type = COSMO Sitkoff cavity dispersion = 2.512 kcal/mol Honig cavity dispersion = 8.260 kcal/mol ASA solvent accesible surface area = 330.407 Angstrom2 ASA solvent accesible volume = 306.953 Angstrom3 +-----------------+ | Structural Data | +-----------------+
JSmol: an open-source HTML5 viewer for chemical structures in 3D
Number of Atoms = 18 Units are Angstrom for bonds and degrees for angles Type I J K L M Value ----------- ----- ----- ----- ----- ----- ---------- 1 Stretch O1 C2 1.38743 2 Stretch O1 H16 0.96163 3 Stretch C2 C3 1.44470 4 Stretch C2 C11 1.35416 5 Stretch C3 C4 1.34591 6 Stretch C3 H17 1.08710 7 Stretch C4 H5 1.07642 8 Stretch C4 N13 1.43682 9 Stretch C6 H7 1.08105 10 Stretch C6 H8 1.08138 11 Stretch C6 C9 1.32985 12 Stretch C9 H10 1.08524 13 Stretch C9 C11 1.46676 14 Stretch C11 O12 1.35982 15 Stretch O12 H18 0.96280 16 Stretch N13 O14 1.23035 17 Stretch N13 O15 1.23434 18 Bend C2 O1 H16 109.72101 19 Bend O1 C2 C3 114.30099 20 Bend O1 C2 C11 117.18657 21 Bend C3 C2 C11 128.06297 22 Bend C2 C3 C4 135.61212 23 Bend C2 C3 H17 111.64480 24 Bend C4 C3 H17 112.59272 25 Bend C3 C4 H5 121.50934 26 Bend C3 C4 N13 127.70944 27 Bend H5 C4 N13 110.73894 28 Bend H7 C6 H8 117.39110 29 Bend H7 C6 C9 120.98963 30 Bend H8 C6 C9 121.61641 31 Bend C6 C9 H10 120.20354 32 Bend C6 C9 C11 124.28354 33 Bend H10 C9 C11 115.41799 34 Bend C2 C11 C9 126.19237 35 Bend C2 C11 O12 117.75841 36 Bend C9 C11 O12 116.02582 37 Bend C11 O12 H18 109.19585 38 Bend C4 N13 O14 120.15693 39 Bend C4 N13 O15 115.69119 40 Bend O14 N13 O15 124.12802 41 Dihedral O1 C2 C3 C4 -143.71197 42 Dihedral O1 C2 C3 H17 31.34159 43 Dihedral O1 C2 C11 C9 -167.87366 44 Dihedral O1 C2 C11 O12 10.28969 45 Dihedral C2 C3 C4 H5 -179.98453 46 Dihedral C2 C3 C4 N13 2.60755 47 Dihedral C2 C11 C9 C6 59.68492 48 Dihedral C2 C11 C9 H10 -123.86419 49 Dihedral C2 C11 O12 H18 -168.11656 50 Dihedral C3 C2 O1 H16 55.77045 51 Dihedral C3 C2 C11 C9 3.93966 52 Dihedral C3 C2 C11 O12 -177.89699 53 Dihedral C3 C4 N13 O14 5.12876 54 Dihedral C3 C4 N13 O15 -176.57564 55 Dihedral C4 C3 C2 C11 44.27693 56 Dihedral H5 C4 C3 H17 4.99537 57 Dihedral H5 C4 N13 O14 -172.50837 58 Dihedral H5 C4 N13 O15 5.78722 59 Dihedral C6 C9 C11 O12 -118.50639 60 Dihedral H7 C6 C9 H10 1.59174 61 Dihedral H7 C6 C9 C11 177.88243 62 Dihedral H8 C6 C9 H10 -179.03931 63 Dihedral H8 C6 C9 C11 -2.74862 64 Dihedral C9 C11 O12 H18 10.23397 65 Dihedral H10 C9 C11 O12 57.94450 66 Dihedral C11 C2 O1 H16 -131.29569 67 Dihedral C11 C2 C3 H17 -140.66951 68 Dihedral N13 C4 C3 H17 -172.41255
+-----------------+ | Eigenvalue Data | +-----------------+ Id = 60057 iupac = C=C/C(=C(\C=C/N(=O)=O)/O)/O mformula = C6H7N1O4 InChI = InChI=1S/C6H7NO4/c1-2-5(8)6(9)3-4-7(10)11/h2-4,8-9H,1H2/b4-3-,6-5- smiles = C=C/C(=C(\C=C/N(=O)=O)/O)/O esmiles = C=C/C(=C(\C=C/N(=O)=O)/O)/O theory{dft} xc{b3lyp} basis{6-311++G(2d,2p)} solvation_type{COSMO} ^{0} theory = dft xc = b3lyp basis = 6-311++G(2d,2p) charge = 0 mult = 1 solvation_type = COSMO twirl webpage = TwirlMol Link image webpage = GIF Image Link Eigevalue Spectra ---------- 67.70 eV ---- ---- ---------- --- -- --- ---- ---- ---- ---- --- -- --- ---- ---- -- -- -- - --- -- --- ---- ---- ---- ---- 6 - - - - 6 - - - - 6 - - - - 8 - - - - - - - - -- 7 - - - - 9 - - - - 8 - - - - -- -- -- - 7 - - - - --- -- --- 8 - - - - 8 - - - - 9 - - - - 8 - - - - - - - - -- 11 - - - - 12 - - - - 10 - - - - 17 - - - - 9 - - - - - - - - -- ---------- LUMO= -3.14 eV HOMO= -6.28 eV ++++++++++ 6 + + + + ++ ++ ++ + ++ ++ ++ + + + + + ++ ++++ ++++ ++++++++++ ++++ ++++ ++++++++++ +++ ++ +++ -33.82 eV ++++++++++
spin eig occ ---------------------------- restricted -33.82 2.00 restricted -29.71 2.00 restricted -29.11 2.00 restricted -28.83 2.00 restricted -23.25 2.00 restricted -22.20 2.00 restricted -20.85 2.00 restricted -19.63 2.00 restricted -17.47 2.00 restricted -16.74 2.00 restricted -16.00 2.00 restricted -15.20 2.00 restricted -14.96 2.00 restricted -14.73 2.00 restricted -14.66 2.00 restricted -13.84 2.00 restricted -12.89 2.00 restricted -12.80 2.00 restricted -12.20 2.00 restricted -11.70 2.00 restricted -11.31 2.00 restricted -10.59 2.00 restricted -10.02 2.00 restricted -9.43 2.00 restricted -9.24 2.00 restricted -9.11 2.00 restricted -8.84 2.00 restricted -8.59 2.00 restricted -7.93 2.00 restricted -6.28 2.00 restricted -3.14 0.00 restricted -1.01 0.00 restricted -0.22 0.00 restricted -0.14 0.00 restricted 0.17 0.00 restricted 0.20 0.00 restricted 0.57 0.00 restricted 0.80 0.00 restricted 0.90 0.00 restricted 1.18 0.00 restricted 1.51 0.00 restricted 1.77 0.00 restricted 1.84 0.00 restricted 2.16 0.00 restricted 2.23 0.00 restricted 2.48 0.00 restricted 2.64 0.00 restricted 2.80 0.00 restricted 2.94 0.00 restricted 3.03 0.00 restricted 3.12 0.00 restricted 3.17 0.00 restricted 3.45 0.00 restricted 3.54 0.00 restricted 3.59 0.00 restricted 3.74 0.00 restricted 3.83 0.00 restricted 3.91 0.00 restricted 4.08 0.00 restricted 4.23 0.00 restricted 4.38 0.00 restricted 4.40 0.00 restricted 4.73 0.00 restricted 4.98 0.00 restricted 5.12 0.00 restricted 5.16 0.00 restricted 5.51 0.00 restricted 5.54 0.00 restricted 5.73 0.00 restricted 5.98 0.00 restricted 6.37 0.00 restricted 6.58 0.00 restricted 6.70 0.00 restricted 6.91 0.00 restricted 6.98 0.00 restricted 7.20 0.00 restricted 7.46 0.00 restricted 7.55 0.00 restricted 7.90 0.00 restricted 8.01 0.00 restricted 8.15 0.00 restricted 8.24 0.00 restricted 8.49 0.00 restricted 8.55 0.00 restricted 8.73 0.00 restricted 8.86 0.00 restricted 8.98 0.00 restricted 9.17 0.00 restricted 9.41 0.00 restricted 9.46 0.00 restricted 9.88 0.00 restricted 10.35 0.00 restricted 10.48 0.00 restricted 10.60 0.00 restricted 10.65 0.00 restricted 11.31 0.00 restricted 11.89 0.00 restricted 12.01 0.00 restricted 12.30 0.00 restricted 12.62 0.00 restricted 13.14 0.00 restricted 13.43 0.00 restricted 13.67 0.00 restricted 13.75 0.00 restricted 13.77 0.00 restricted 14.21 0.00 restricted 14.40 0.00 restricted 14.81 0.00 restricted 15.02 0.00 restricted 15.27 0.00 restricted 15.34 0.00 restricted 15.35 0.00 restricted 15.80 0.00 restricted 15.92 0.00 restricted 16.03 0.00 restricted 16.67 0.00 restricted 16.75 0.00 restricted 17.15 0.00 restricted 17.59 0.00 restricted 17.76 0.00 restricted 17.97 0.00 restricted 18.02 0.00 restricted 18.46 0.00 restricted 18.67 0.00 restricted 18.88 0.00 restricted 19.10 0.00 restricted 19.17 0.00 restricted 19.60 0.00 restricted 19.85 0.00 restricted 20.46 0.00 restricted 20.52 0.00 restricted 20.93 0.00 restricted 21.05 0.00 restricted 21.40 0.00 restricted 22.30 0.00 restricted 22.65 0.00 restricted 23.36 0.00 restricted 23.74 0.00 restricted 24.10 0.00 restricted 24.30 0.00 restricted 24.52 0.00 restricted 24.83 0.00 restricted 25.12 0.00 restricted 25.43 0.00 restricted 26.37 0.00 restricted 26.75 0.00 restricted 26.87 0.00 restricted 27.41 0.00 restricted 27.72 0.00 restricted 27.89 0.00 restricted 28.34 0.00 restricted 28.60 0.00 restricted 29.03 0.00 restricted 29.26 0.00 restricted 29.32 0.00 restricted 29.40 0.00 restricted 29.82 0.00 restricted 30.15 0.00 restricted 30.26 0.00 restricted 30.58 0.00 restricted 30.66 0.00 restricted 30.74 0.00 restricted 31.17 0.00 restricted 31.32 0.00 restricted 31.60 0.00 restricted 32.01 0.00 restricted 32.40 0.00 restricted 32.49 0.00 restricted 32.70 0.00 restricted 33.05 0.00 restricted 33.28 0.00 restricted 33.68 0.00 restricted 33.94 0.00 restricted 34.29 0.00 restricted 34.72 0.00 restricted 35.06 0.00 restricted 35.60 0.00 restricted 35.70 0.00 restricted 36.00 0.00 restricted 36.21 0.00 restricted 36.64 0.00 restricted 37.14 0.00 restricted 37.31 0.00 restricted 37.45 0.00 restricted 37.80 0.00 restricted 38.20 0.00 restricted 38.40 0.00 restricted 39.02 0.00 restricted 39.17 0.00 restricted 39.29 0.00 restricted 40.08 0.00 restricted 40.38 0.00 restricted 40.60 0.00 restricted 40.90 0.00 restricted 41.01 0.00 restricted 41.57 0.00 restricted 42.09 0.00 restricted 42.28 0.00 restricted 42.65 0.00 restricted 43.16 0.00 restricted 43.57 0.00 restricted 43.82 0.00 restricted 44.84 0.00 restricted 45.72 0.00 restricted 46.47 0.00 restricted 47.40 0.00 restricted 48.23 0.00 restricted 49.12 0.00 restricted 49.69 0.00 restricted 50.27 0.00 restricted 50.54 0.00 restricted 51.49 0.00 restricted 51.93 0.00 restricted 52.31 0.00 restricted 53.04 0.00 restricted 54.24 0.00 restricted 54.95 0.00 restricted 55.83 0.00 restricted 56.82 0.00 restricted 57.87 0.00 restricted 59.05 0.00 restricted 60.23 0.00 restricted 61.04 0.00 restricted 62.00 0.00 restricted 62.22 0.00 restricted 63.58 0.00 restricted 64.73 0.00 restricted 66.03 0.00 restricted 67.70 0.00
+----------------------------------------+ | Vibrational Density of States Analysis | +----------------------------------------+ Total number of frequencies = 54 Total number of negative frequencies = 0 Number of lowest frequencies = 14 (frequency threshold = 500 ) Exact dos norm = 48.000 Generating vibrational DOS Generating model vibrational DOS to have a proper norm 10.00 48.00 14.00 48.00 50.00 47.77 13.77 48.00 100.00 47.12 13.12 48.00 Generating IR Spectra Writing vibrational density of states (DOS) to vdos.dat Writing model vibrational density of states (DOS_FIXED) to vdos-model.dat Writing IR spectra to irdos.dat Temperature= 298.15 zero-point correction to energy = 81.900 kcal/mol ( 0.130517) vibrational contribution to enthalpy correction = 87.148 kcal/mol ( 0.138880) vibrational contribution to Entropy = 32.773 cal/mol-k hindered rotor enthalpy correction = 0.000 kcal/mol ( 0.000000) hindered rotor entropy correction = 0.000 cal/mol-k
DOS sigma = 10.000000 - vibrational DOS enthalpy correction = 0.138883 kcal/mol ( 87.150 kcal/mol) - model vibrational DOS enthalpy correction = 0.138881 kcal/mol ( 87.149 kcal/mol) - vibrational DOS Entropy = 0.000052 ( 32.861 cal/mol-k) - model vibrational DOS Entropy = 0.000052 ( 32.858 cal/mol-k) - original gas Energy = -588.527285 (-369306.444 kcal/mol) - original gas Enthalpy = -588.384630 (-369216.926 kcal/mol, delta= 0.000) - unajusted DOS gas Enthalpy = -588.384627 (-369216.925 kcal/mol, delta= 0.002) - model DOS gas Enthalpy = -588.384628 (-369216.926 kcal/mol, delta= 0.001) - original gas Entropy = 0.000166 ( 104.032 cal/mol-k,delta= 0.000) - unajusted DOS gas Entropy = 0.000166 ( 104.119 cal/mol-k,delta= 0.087) - model DOS gas Entropy = 0.000166 ( 104.116 cal/mol-k,delta= 0.084) - original gas Free Energy = -588.434059 (-369247.944 kcal/mol, delta= 0.000) - unadjusted DOS gas Free Energy = -588.434097 (-369247.968 kcal/mol, delta= -0.024) - model DOS gas Free Energy = -588.434097 (-369247.968 kcal/mol, delta= -0.024) - original sol Free Energy = -588.466660 (-369268.402 kcal/mol) - unadjusted DOS sol Free Energy = -588.466699 (-369268.426 kcal/mol) - model DOS sol Free Energy = -588.466699 (-369268.426 kcal/mol) DOS sigma = 50.000000 - vibrational DOS enthalpy correction = 0.138770 kcal/mol ( 87.080 kcal/mol) - model vibrational DOS enthalpy correction = 0.139020 kcal/mol ( 87.236 kcal/mol) - vibrational DOS Entropy = 0.000054 ( 33.895 cal/mol-k) - model vibrational DOS Entropy = 0.000055 ( 34.401 cal/mol-k) - original gas Energy = -588.527285 (-369306.444 kcal/mol) - original gas Enthalpy = -588.384630 (-369216.926 kcal/mol, delta= 0.000) - unajusted DOS gas Enthalpy = -588.384739 (-369216.995 kcal/mol, delta= -0.069) - model DOS gas Enthalpy = -588.384489 (-369216.838 kcal/mol, delta= 0.088) - original gas Entropy = 0.000166 ( 104.032 cal/mol-k,delta= 0.000) - unajusted DOS gas Entropy = 0.000168 ( 105.154 cal/mol-k,delta= 1.122) - model DOS gas Entropy = 0.000168 ( 105.659 cal/mol-k,delta= 1.627) - original gas Free Energy = -588.434059 (-369247.944 kcal/mol, delta= 0.000) - unadjusted DOS gas Free Energy = -588.434701 (-369248.347 kcal/mol, delta= -0.403) - model DOS gas Free Energy = -588.434691 (-369248.341 kcal/mol, delta= -0.397) - original sol Free Energy = -588.466660 (-369268.402 kcal/mol) - unadjusted DOS sol Free Energy = -588.467303 (-369268.805 kcal/mol) - model DOS sol Free Energy = -588.467293 (-369268.799 kcal/mol) DOS sigma = 100.000000 - vibrational DOS enthalpy correction = 0.138384 kcal/mol ( 86.837 kcal/mol) - model vibrational DOS enthalpy correction = 0.139368 kcal/mol ( 87.455 kcal/mol) - vibrational DOS Entropy = 0.000051 ( 32.277 cal/mol-k) - model vibrational DOS Entropy = 0.000055 ( 34.209 cal/mol-k) - original gas Energy = -588.527285 (-369306.444 kcal/mol) - original gas Enthalpy = -588.384630 (-369216.926 kcal/mol, delta= 0.000) - unajusted DOS gas Enthalpy = -588.385125 (-369217.238 kcal/mol, delta= -0.311) - model DOS gas Enthalpy = -588.384141 (-369216.620 kcal/mol, delta= 0.307) - original gas Entropy = 0.000166 ( 104.032 cal/mol-k,delta= 0.000) - unajusted DOS gas Entropy = 0.000165 ( 103.536 cal/mol-k,delta= -0.496) - model DOS gas Entropy = 0.000168 ( 105.467 cal/mol-k,delta= 1.435) - original gas Free Energy = -588.434059 (-369247.944 kcal/mol, delta= 0.000) - unadjusted DOS gas Free Energy = -588.434319 (-369248.107 kcal/mol, delta= -0.163) - model DOS gas Free Energy = -588.434252 (-369248.065 kcal/mol, delta= -0.121) - original sol Free Energy = -588.466660 (-369268.402 kcal/mol) - unadjusted DOS sol Free Energy = -588.466920 (-369268.565 kcal/mol) - model DOS sol Free Energy = -588.466854 (-369268.523 kcal/mol) Normal Mode Frequency (cm-1) IR Intensity (arbitrary) ----------- ---------------- ------------------------ 1 -0.000 0.630 2 -0.000 0.196 3 -0.000 0.107 4 0.000 0.383 5 0.000 0.694 6 0.000 0.034 7 55.070 0.951 8 73.560 0.017 9 111.470 0.764 10 130.120 0.545 11 135.650 2.039 12 193.740 0.527 13 243.260 18.248 14 255.060 1.214 15 295.650 4.134 16 350.050 1.862 17 372.040 0.734 18 408.550 11.955 19 440.250 7.199 20 487.750 0.134 21 563.830 5.976 22 628.220 3.708 23 662.610 0.199 24 693.460 6.219 25 736.010 0.971 26 759.770 1.170 27 822.870 1.241 28 845.440 5.472 29 952.420 5.831 30 981.400 11.159 31 993.830 8.292 32 1008.260 3.823 33 1026.820 5.148 34 1127.670 7.138 35 1202.060 52.123 36 1236.810 5.233 37 1271.930 63.936 38 1281.960 5.614 39 1324.880 20.520 40 1336.800 54.622 41 1352.350 17.745 42 1426.870 5.993 43 1472.590 11.795 44 1539.310 18.614 45 1644.840 71.690 46 1679.970 0.501 47 1696.100 10.538 48 3120.000 3.723 49 3137.210 1.283 50 3155.940 4.888 51 3221.610 1.448 52 3240.040 11.293 53 3810.180 8.120 54 3811.210 51.606 No Hindered Rotor Data +-------------------------------------+ | Reactions Contained in the Database | +-------------------------------------+ Reactions Containing INCHIKEY = LXDUWERPQQRTGJ-OUPQRBNQSA-N Reactionid Erxn(gas) Hrxn(gas) Grxn(gas) delta_Solv Grxn(aq) ReactionType Reaction
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KEYWORDs - reaction: :reaction chinese_room: :chinese_room molecule: :molecule nmr: :nmr predict: :predict submitesmiles: :submitesmiles nosubmitmissingesmiles resubmitmissingesmiles submitmachines: :submitmachines useallentries nomodelcorrect eigenvalues: :eigenvalues frequencies: :frequencies nwoutput: :nwoutput xyzfile: :xyzfile alleigs: :alleigs allfreqs: :allfreqs reactionenumerate: energytype:[erxn(gas) hrxn(gas) grxn(gas) delta_solvation grxn(aq)] :energytype energytype:[kcal/mol kj/mol ev cm-1 ry hartree au] :energytype tablereactions: reaction: ... :reaction reaction: ... :reaction ... :tablereactions tablemethods: method: ... :method method: ... :method ... :tablemethods :reactionenumerate rotatebonds xyzinput: label: :label xyzdata: ... xyz data ... :xyzdata :xyzinput submitHf: :submitHf nmrexp: :nmrexp findreplace: old text | new text :findreplace listnwjobs fetchnwjob: :fetchnwjob pushnwjob: :pushnwjob printcsv: :printcsv printeig: :printeig printfreq: :printfreq printxyz: :printxyz printjobinfo: :printjobinfo printnwout: :printnwout badids: :badids hup_string: database: table: request_table: listallesmiles queuecheckThis software service and its documentation were developed at the Environmental Molecular Sciences Laboratory (EMSL) at Pacific Northwest National Laboratory, a multiprogram national laboratory, operated for the U.S. Department of Energy by Battelle under Contract Number DE-AC05-76RL01830. Support for this work was provided by the Department of Energy Office of Biological and Environmental Research, and Department of Defense environmental science and technology program (SERDP). THE SOFTWARE SERVICE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE SERVICE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE SERVICE.