Results from an EMSL Arrows Request

Making molecular modeling accessible by combining NWChem, databases, web APIs (https://arrows.emsl.pnnl.gov/api), and email (arrows@emsl.pnnl.gov)

Arrows Movie
#chemdb_queue_nwchem - version 1.0

#########################  START NWCHEM INPUT DECK - NWJOB 294081 ########################
#
# queue_nwchem_JobId: 5ebdbf7149db98cbc1f62e7c
# queue_nwchem_restart_count: 0
#

#nwchem_input  Al27Cu27.rs.nw
#nwchem_output Al27Cu27.out03
#nwchem_done   Al27Cu27.done
#
#mformula_off
#
#transfer_files *.nw *.xyz *.ion_motion *.emotion *.fei *.cif *.hist *.gr meta.dat *.meta_gaussians *.cube *_epath *_final_epath POWER_SPECTRUM VELOCITY_SPECTRUM VEL_CORRELATION PAIR_DISTRIBUTION *.dipole_powerspectrum *.dipole_correlation
#bad_files md_xs
#
#curdir we31869.emsl.pnl.gov:/media/seagate2/Projects/Eric/Samsung/Harsono/Al27Cu27-model-2meta_stage
#
#permdir Al27Cu27-model-2meta
#deletescratch no
#queuesave no
#
#machine harsono
#cputime 18:05:00
#ncpus 48
#queue regular
#

title "swnc: e theory=pspw xc=pbe formula=Al27Cu27 charge=0 mult=1"

echo

restart pspw_pbe_Al27Cu27

memory 1900 mb




### Adding Metadynamics ###
# collective_variable_type    = Z
nwpw
   metadynamics
      update      10
      print 100
      print_shift 1
      #start_collective_coordinates
      z 48 w 0.0050 sigma 0.100 range -13 13 nrange 501
      #end_collective_coordinates
   end
end



#### equilibrating: temperature=300.0K over 10.00 ps ####
nwpw
   Car-Parrinello
      temperature 300.0 start
      time_step 5.0
      fake_mass 750.0
      loop 10 500
      xyz_filename        tequil.xyz
      emotion_filename    tequil.emotion
      ion_motion_filename tequil.ion_motion
      fei                 tequil.fei
   end
end
task pspw car-parrinello



# queue_name: nwchem :queue_name
# label:nwchem-654.nw Al27Cu27.out03 curdir=we31869.emsl.pnl.gov:/media/seagate2/Projects/Eric/Samsung/Harsono/Al27Cu27-model-2meta_stage QWAIT::294080::QWAIT :label

#########################  END   NWCHEM INPUT DECK - NWJOB 294081 ########################